YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253731365, gi...
Organism:	Staphylococcus aureus subsp. aureus USA300_TCH959
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253731365, gi....

Description	E-value	Query Range	Subject Range
gi\|68447879, gi\|... - gi\|70727153\|ref\|YP_254069.1\| hypothetical protein SH2154 [Staphylococcus haemolyticus JCSC1435], gi\|...	123.0	[0..1]	[104..2]
gi\|251810171, gi... - gi\|251810171\|ref\|ZP_04824644.1\| CHY zinc finger family protein [Staphylococcus epidermidis BCM-HMP00... gi\|57866347, gi\|... - gi\|57866347\|ref\|YP_187997.1\| hypothetical protein SERP0404 [Staphylococcus epidermidis RP62A], gi\|57... gi\|27314980, gi\|... - gi\|27467437\|ref\|NP_764074.1\| hypothetical protein SE0519 [Staphylococcus epidermidis ATCC 12228], gi...	122.0	[0..1]	[104..1]
gi\|72495803, gi\|... - gi\|73663288\|ref\|YP_302069.1\| hypothetical protein SSP1979 [Staphylococcus saprophyticus subsp. sapro...	119.0	[0..1]	[104..1]
gi\|165976003, gi... - gi\|165976003\|ref\|YP_001651596.1\| hypothetical protein APJL_0582 [Actinobacillus pleuropneumoniae ser... gi\|126096863, gi... - gi\|126208071\|ref\|YP_001053296.1\| hypothetical protein APL_0589 [Actinobacillus pleuropneumoniae L20]... gi\|190149903, gi... - gi\|190149903\|ref\|YP_001968428.1\| hypothetical protein APP7_0634 [Actinobacillus pleuropneumoniae ser... gi\|32034369 - gi\|32034369\|ref\|ZP_00134559.1\| COG4357: Uncharacterized conserved protein [Actinobacillus pleuropneu...	117.0	[0..1]	[104..1]
gi\|76573604 - gi\|76573604\|dbj\|BAE44688.1\| hypothetical protein [Candida albicans] gi\|46443308, gi\|... - gi\|77022694\|ref\|XP_888791.1\| hypothetical protein CaO19_6555 [Candida albicans SC5314], gi\|68469208\|...	116.0	[0..6]	[102..19]
gi\|22776464, gi\|... - gi\|23098239\|ref\|NP_691705.1\| hypothetical protein OB0784 [Oceanobacillus iheyensis HTE831], gi\|22776...	113.0	[0..1]	[102..1]
gi\|76802166, gi\|... - gi\|76802166\|ref\|YP_327174.1\| hypothetical protein NP3052A [Natronomonas pharaonis DSM 2160], gi\|7655...	113.0	[0..3]	[103..7]
gi\|23494041, gi\|... - gi\|25028755\|ref\|NP_738809.1\| hypothetical protein CE2199 [Corynebacterium efficiens YS-314], gi\|2349...	113.0	[0..1]	[104..4]
YEMC_SCHPO - Uncharacterized protein C29B12.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC29B1... SPAC29B12.12 - helper of TIM	111.0	[0..4]	[103..12]
HOT13_YEAST - Helper of Tim protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOT13 PE=1 SV=1 gi\|190409746 - gi\|190409746\|gb\|EDV13011.1\| assembly factor for the Translocase of the Inner Membrane complexes [Sac... HOT13 - Mitochondrial intermembrane space protein, first component of a pathway mediating assembly of small ...	111.0	[0..4]	[103..6]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVYGSLID TETRCRHYFT EEDIIAIKFK CCNKYYPCYK CHNEFEKHAI KRWSEPSFNE  60
   61 KAILCGVCKH ELTINEYMMV ERCPNCQSRF NNRCKYHYHI YFEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2dktA
Description:	No description for 2dktA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits