YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229840870, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229840870, gi....

Description	E-value	Query Range	Subject Range
gi\|77974452 - gi\|77974452\|ref\|ZP_00829992.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia fred...	176.0	[0..1]	[108..1]
gi\|77976487 - gi\|77976487\|ref\|ZP_00831973.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia inte...	176.0	[0..1]	[108..1]
gi\|126208846, gi... - gi\|126208846\|ref\|YP_001054071.1\| hypothetical protein APL_1382 [Actinobacillus pleuropneumoniae L20]... gi\|32035442 - gi\|32035442\|ref\|ZP_00135408.1\| COG3171: Uncharacterized protein conserved in bacteria [Actinobacillu... gi\|190150702, gi... - gi\|190150702\|ref\|YP_001969227.1\| hypothetical protein APP7_1433 [Actinobacillus pleuropneumoniae ser...	175.0	[0..1]	[108..1]
gi\|77956387 - gi\|77956387\|ref\|ZP_00820490.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961508 - gi\|77961508\|ref\|ZP_00825344.1\| COG3171: Uncharacterized protein conserved in bacteria [Yersinia moll...	174.0	[0..1]	[108..1]
gi\|15603181, gi\|... - gi\|15603181\|ref\|NP_246254.1\| hypothetical protein PM1316 [Pasteurella multocida subsp. multocida str...	174.0	[0..1]	[108..1]
Y341_HAEIN, YGGL... - (P44649) Protein HI0341, Uncharacterized protein HI_0341 OS=Haemophilus influenzae GN=HI_0341 PE=1 S... Y341_HAEIN - Uncharacterized protein HI_0341 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd...	173.0	[0..1]	[108..1]
gi\|36784565, gi\|... - gi\|37525139\|ref\|NP_928483.1\| hypothetical protein plu1171 [Photorhabdus luminescens subsp. laumondii...	172.0	[0..1]	[108..1]
gi\|113461797, gi... - gi\|113461797\|ref\|YP_719866.1\| hypothetical protein HS_1661 [Haemophilus somnus 129PT], gi\|112823840\|...	171.0	[0..1]	[108..1]
gi\|33148161, gi\|... - gi\|33151939\|ref\|NP_873292.1\| hypothetical protein HD0776 [Haemophilus ducreyi 35000HP], gi\|33148161\|...	171.0	[0..1]	[108..1]
gi\|170718110, gi... - gi\|32028616\|ref\|ZP_00131772.1\| COG3171: Uncharacterized protein conserved in bacteria [Haemophilus s...	171.0	[0..1]	[108..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNRSRRLR KKMHIDEFQE LGFSVQWAFD EGTSVDVIDE TVDAFIDEVI EANGLAFDGS  60
   61 GYLQWEGLIC LQEIGHCTDE HRALVTKWLE ARKLKNVETS ELFDIWWD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.657577
Match:	PF04320.5
Description:	No description for PF04320.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits