YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253797574, gi...
Organism:	Mycobacterium tuberculosis KZN 1435
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253797574, gi....

Description	E-value	Query Range	Subject Range
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	80.0	[0..1]	[55..3]
RK33_CYAPA - 50S ribosomal protein L33, cyanelle OS=Cyanophora paradoxa GN=rpl33 PE=3 SV=1	79.0	[0..1]	[55..1]
RL331_SALTO - 50S ribosomal protein L33 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rp...	79.0	[0..1]	[55..1]
gi\|88816249, gi\|... - gi\|88854441\|ref\|ZP_01129108.1\| 50S ribosomal protein L33 [marine actinobacterium PHSC20C1], gi\|88816...	78.0	[0..1]	[55..1]
gi\|84384328, gi\|... - gi\|84494835\|ref\|ZP_00993954.1\| 50S ribosomal protein L33 [Janibacter sp. HTCC2649], gi\|84384328\|gb\|E...	78.0	[0..1]	[55..1]
RL33_ACIC1 - 50S ribosomal protein L33 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpmG PE=3 SV=1	78.0	[0..1]	[55..1]
RL33_LEIXX - 50S ribosomal protein L33 OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=rpmG PE=3 SV=1 RL33_LEIXX - 50S ribosomal protein L33 OS=Leifsonia xyli subsp. xyli GN=rpmG PE=3 SV=1 RL33_CLAM3 - 50S ribosomal protein L33 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rp...	77.0	[0..1]	[55..1]
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	77.0	[0..1]	[55..28]
RK33_PANGI - 50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1	76.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTDVRPK ITLACEVCKH RNYITKKNRR NDPDRLELKK FCPNCGKHQA HRETR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits