YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226898637, gi...
Organism:	Escherichia sp. 3_2_53FAA
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226898637, gi....

Description	E-value	Query Range	Subject Range
gi\|62179202, gi\|... - gi\|62179202\|ref\|YP_215619.1\| hypothetical protein SC0632 [Salmonella enterica subsp. enterica serova... gi\|56128519, gi\|... - gi\|56414262\|ref\|YP_151337.1\| hypothetical protein SPA2133 [Salmonella enterica subsp. enterica serov... gi\|194450521, gi... - gi\|194450521\|ref\|YP_002044633.1\| hypothetical protein SeHA_C0713 [Salmonella enterica subsp. enteric... gi\|194446120, gi... - gi\|194446120\|ref\|YP_002039842.1\| hypothetical protein SNSL254_A0654 [Salmonella enterica subsp. ente... gi\|168818780, gi... - gi\|205344179\|gb\|EDZ30943.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|168465768, gi... - gi\|195631717\|gb\|EDX50237.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|197242371, gi... - gi\|197264116\|ref\|ZP_03164190.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197215033, gi... - gi\|197251330\|ref\|YP_002145575.1\| hypothetical protein SeAg_B0640 [Salmonella enterica subsp. enteric... gi\|194711281, gi... - gi\|194735779\|ref\|YP_002113719.1\| hypothetical protein SeSA_A0759 [Salmonella enterica subsp. enteric... gi\|194472493, gi... - gi\|194472493\|ref\|ZP_03078477.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|167990599, gi... - gi\|205330849\|gb\|EDZ17613.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|167550870, gi... - gi\|205324287\|gb\|EDZ12126.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|161364557, gi... - gi\|161615193\|ref\|YP_001589158.1\| hypothetical protein SPAB_02961 [Salmonella enterica subsp. enteric... gi\|205349815, gi... - gi\|205349815\|gb\|EDZ36446.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205340323, gi... - gi\|205340323\|gb\|EDZ27087.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|168236588, gi... - gi\|197290239\|gb\|EDY29595.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205333947, gi... - gi\|205333947\|gb\|EDZ20711.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|213852335 - gi\|213852335\|ref\|ZP_03381867.1\| hypothetical protein SentesT_05289 [Salmonella enterica subsp. enter... gi\|213646845 - gi\|213646845\|ref\|ZP_03376898.1\| hypothetical protein SentesTy_05770 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybdD] [protein=putative cytoplasmic protein] [protein_id=YP_005236308.1] [location=664137..664... gi\|213622067 - gi\|213622067\|ref\|ZP_03374850.1\| hypothetical protein SentesTyp_32906 [Salmonella enterica subsp. ent... gi\|213582453 - gi\|213582453\|ref\|ZP_03364279.1\| hypothetical protein SentesTyph_15136 [Salmonella enterica subsp. en... gi\|25511991, gi\|... - gi\|25511991\|pir\|\|AC0576 conserved hypothetical protein STY0645 [imported] - Salmonella enterica subs... gi\|16419112, gi\|... - gi\|16763978\|ref\|NP_459593.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419112\|... gi\|224582434, gi... - gi\|224582434\|ref\|YP_002636232.1\| hypothetical protein SPC_0613 [Salmonella enterica subsp. enterica ... gi\|213999497 - gi\|213999497\|ref\|ZP_03410232.1\| hypothetical protein Salmonellentericaenterica_01684 [Salmonella ent... gi\|213978231 - gi\|213978231\|ref\|ZP_03405490.1\| hypothetical protein Salmonellaentericaenterica_28508 [Salmonella en... gi\|204930504, gi... - gi\|204930504\|ref\|ZP_03221434.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|199603268, gi... - gi\|200390823\|ref\|ZP_03217434.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|29142667, gi\|... - gi\|29142667\|ref\|NP_806009.1\| hypothetical protein t2267 [Salmonella enterica subsp. enterica serovar... gi\|198242487, gi... - gi\|198242487\|ref\|YP_002214595.1\| hypothetical protein SeD_A0697 [Salmonella enterica subsp. enterica... gi\|16759560 - gi\|16759560\|ref\|NP_455177.1\| hypothetical protein STY0645 [Salmonella enterica subsp. enterica serov... gi\|197363185, gi... - gi\|197363185\|ref\|YP_002142822.1\| hypothetical protein SSPA1983 [Salmonella enterica subsp. enterica ... gi\|213424765 - gi\|213424765\|ref\|ZP_03357515.1\| hypothetical protein SentesTyphi_03061 [Salmonella enterica subsp. e... gi\|213163856 - gi\|213163856\|ref\|ZP_03349566.1\| hypothetical protein Salmoneentericaenterica_29166 [Salmonella enter... gi\|206707870, gi... - gi\|207856067\|ref\|YP_002242718.1\| hypothetical protein SEN0570 [Salmonella enterica subsp. enterica s... gi\|205271671, gi... - gi\|205351890\|ref\|YP_002225691.1\| hypothetical protein SG0605 [Salmonella enterica subsp. enterica se... gi\|238911552 - gi\|238911552\|ref\|ZP_04655389.1\| hypothetical protein SentesTe_10492 [Salmonella enterica subsp. ente...	117.0	[0..1]	[65..1]
gi\|213966762, gi... - gi\|213966762\|ref\|ZP_03394913.1\| hypothetical protein PSPTOT1_0520 [Pseudomonas syringae pv. tomato T... gi\|237801449 - gi\|237801449\|ref\|ZP_04589910.1\| hypothetical protein Psyrpo1_21646 [Pseudomonas syringae pv. oryzae ... gi\|71555408, gi\|... - gi\|71734855\|ref\|YP_276446.1\| hypothetical protein PSPPH_4329 [Pseudomonas syringae pv. phaseolicola ... gi\|115265652 - gi\|115265652\|dbj\|BAF32913.1\| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola] gi\|115265598 - gi\|115265598\|dbj\|BAF32860.1\| conserved hypothetical protein [Pseudomonas syringae pv. actinidiae]	117.0	[0..1]	[65..1]
gi\|70732656, gi\|... - gi\|70732656\|ref\|YP_262419.1\| hypothetical protein PFL_5351 [Pseudomonas fluorescens Pf-5], gi\|683469...	117.0	[0..1]	[65..1]
gi\|126359973, gi... - gi\|167035625\|ref\|YP_001670856.1\| hypothetical protein PputGB1_4634 [Pseudomonas putida GB-1], gi\|166... tr\|I7C0S1\|I7C0S1... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0813 PE=4 SV=1 tr\|E4R4X6\|E4R4X6... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4336 PE=4 SV=1 gi\|26991324, gi\|... - gi\|26991324\|ref\|NP_746749.1\| hypothetical protein PP_4640 [Pseudomonas putida KT2440], gi\|24986384\|g... gi\|82714843, gi\|... - gi\|82738066\|ref\|ZP_00900906.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714843\|g...	115.0	[0..1]	[65..1]
gi\|77461103, gi\|... - gi\|77461103\|ref\|YP_350610.1\| hypothetical protein Pfl01_4882 [Pseudomonas fluorescens Pf0-1], gi\|773...	115.0	[0..1]	[65..1]
gi\|28855021, gi\|... - gi\|28871769\|ref\|NP_794388.1\| hypothetical protein PSPTO_4637 [Pseudomonas syringae pv. tomato str. D... tr\|Q87WB6\|Q87WB6... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4637 PE=4 SV=1	115.0	[0..1]	[65..1]
gi\|192957594, gi... - gi\|75236582\|ref\|ZP_00720670.1\| COG2879: Uncharacterized small protein [Escherichia coli E110019], gi...	115.0	[0..1]	[65..1]
gi\|66047499, gi\|... - gi\|66047499\|ref\|YP_237340.1\| hypothetical protein Psyr_4272 [Pseudomonas syringae pv. syringae B728a...	115.0	[0..1]	[65..1]
gi\|104780037, gi... - gi\|95109024\|emb\|CAK13720.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047800... gi\|95109024 - gi\|95109024\|emb\|CAK13720.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	115.0	[0..1]	[65..1]
gi\|188495705, gi... - gi\|75514694\|ref\|ZP_00736949.1\| COG2879: Uncharacterized small protein [Escherichia coli 53638], gi\|1...	114.0	[0..1]	[65..1]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSLAKAGK YLGQAAKLMI GMPDYDNYVE HMRVNHPDQT PMTYEEFFRE RQDARYGGKG  60
   61 GARCC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.236572
Match:	PF04328.4
Description:	No description for PF04328.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits