YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254551335
Organism:	Mycobacterium tuberculosis '98-R604 INH-RIF-EM'
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254551335.

Description	E-value	Query Range	Subject Range
Y2295_MYCTO - UPF0167 protein MT2352 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2352 PE=3 SV=1 YM95_MYCTU, Y229... - (P67309) Hypothetical UPF0167 protein Rv2295/MT2352, UPF0167 protein Rv2295/MT2352 OS=Mycobacterium ... Y2317_MYCBO - UPF0167 protein Mb2317 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2317 PE=3 SV=1 YN17_MYCBO, Y231... - (P67310) Hypothetical UPF0167 protein Mb2317, UPF0167 protein Mb2317 OS=Mycobacterium bovis GN=Mb231... Y2295_MYCTU - UPF0167 protein Rv2295 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2295 PE=1 SV=1	317.0	[0..26]	[212..1]
YIEJ_ECOLI - UPF0167 protein yieJ - Escherichia coli gi\|238902808, gi... - gi\|238902808\|ref\|YP_002928604.1\| hypothetical protein BWG_3408 [Escherichia coli BW2952], gi\|2388605... EG11727 - UPF0167 family protein / Required for colicin E2 tolerance; UPF0167 family; predicted to have thiol-... EG11727 - UPF0167 family protein / Required for colicin E2 tolerance; UPF0167 family; predicted to have thiol-... gi\|89110290, gi\|... - gi\|89110290\|ref\|AP_004070.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|169891054, gi... - gi\|170083219\|ref\|YP_001732539.1\| hypothetical protein ECDH10B_3904 [Escherichia coli str. K-12 subst...	278.0	[0..31]	[212..2]
gi\|253775648, gi... - gi\|254290419\|ref\|YP_003056167.1\| hypothetical protein ECD_03601 [Escherichia coli BL21(DE3)], gi\|253... gi\|242379256, gi... - gi\|251786983\|ref\|YP_003001287.1\| hypothetical protein B21_03545 [Escherichia coli BL21], gi\|24237925... gi\|254163669, gi... - gi\|254163669\|ref\|YP_003046777.1\| hypothetical protein ECB_03601 [Escherichia coli B str. REL606], gi... gi\|218354172, gi... - gi\|218697440\|ref\|YP_002405107.1\| hypothetical protein EC55989_4187 [Escherichia coli 55989], gi\|2183... gi\|209914453, gi... - gi\|209921194\|ref\|YP_002295278.1\| hypothetical protein ECSE_4003 [Escherichia coli SE11], gi\|20991445... gi\|218556284, gi... - gi\|218556284\|ref\|YP_002389198.1\| hypothetical protein ECIAI1_3897 [Escherichia coli IAI1], gi\|218363... gi\|83588419, gi\|... - gi\|83588419\|ref\|ZP_00927043.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|170022246, gi... - gi\|170022246\|ref\|YP_001727200.1\| hypothetical protein EcolC_4277 [Escherichia coli ATCC 8739], gi\|16... gi\|124530069, gi... - gi\|124530069\|ref\|ZP_01700852.1\| protein of unknown function UPF0167 [Escherichia coli B], gi\|1244994... gi\|188491650, gi... - gi\|75514222\|ref\|ZP_00736530.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192930490, gi... - gi\|75258255\|ref\|ZP_00729703.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75210673, gi\|... - gi\|75210673\|ref\|ZP_00710814.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|157068878, gi... - gi\|75197613\|ref\|ZP_00707683.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	277.0	[0..31]	[212..2]
gi\|157155247, gi... - gi\|75188472\|ref\|ZP_00701739.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	277.0	[0..31]	[212..2]
gi\|75231013, gi\|... - gi\|75231013\|ref\|ZP_00717448.1\| COG3196: Uncharacterized protein conserved in bacteria [Escherichia c...	275.0	[0..31]	[212..2]
gi\|29604210, gi\|... - gi\|29827112\|ref\|NP_821746.1\| hypothetical protein SAV_571 [Streptomyces avermitilis MA-4680], gi\|296...	271.0	[0..37]	[212..96]
gi\|49081776 - gi\|49081776\|gb\|AAT50288.1\| PA1536 [synthetic construct]	268.0	[0..36]	[212..4]
gi\|194550869, gi... - gi\|84328451\|ref\|ZP_00976458.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... YF36_PSEAE, Y153... - (Q9I3H7) Hypothetical UPF0167 protein PA1536, UPF0167 protein PA1536 OS=Pseudomonas aeruginosa GN=PA... gi\|194545623, gi... - gi\|84321730\|ref\|ZP_00970084.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|107100967 - gi\|107100967\|ref\|ZP_01364885.1\| hypothetical protein PaerPA_01001997 [Pseudomonas aeruginosa PACS2] Y1536_PSEAE - UPF0167 protein PA1536 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1222... gi\|218772734, gi... - gi\|218892508\|ref\|YP_002441375.1\| hypothetical protein PLES_37921 [Pseudomonas aeruginosa LESB58], gi...	268.0	[0..36]	[212..4]
gi\|115584701, gi... - gi\|32041579\|ref\|ZP_00139162.1\| COG3196: Uncharacterized protein conserved in bacteria [Pseudomonas a...	263.0	[0..36]	[212..4]
SO0898 - conserved hypothetical protein gi\|24346483, gi\|... - gi\|24372486\|ref\|NP_716528.1\| hypothetical protein SO_0898 [Shewanella oneidensis MR-1], gi\|24346483\|...	257.0	[0..38]	[202..4]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQSANHACL PTPLASTTGR GQDHEMPVEE TSTPQKLPQF RYHPDPVGTG SIVADEVSCV  60
   61 SCEQRRPYTY TGPVYAEEEL NEAICPWCIA DGSAASRFDA TFTDAMWAVP DDVPEDVTEE 120
  121 VLCRTPGFTG WLQEEWLHHC GDAAAFLGPV GASEVADLPD ALDALRNEYR GYDWPADKIE 180
  181 EFILTLDRNG LATAYLFRCL SCGVHLAYAD FA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	144.376751
Match:	PF03691.5
Description:	No description for PF03691.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits