YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229519478, gi...
Organism:	Vibrio cholerae RC9
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229519478, gi....

Description	E-value	Query Range	Subject Range
gi\|254226257, gi... - gi\|75817952\|ref\|ZP_00748198.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae V51],...	248.0	[0..1]	[194..1]
gi\|121628693, gi... - gi\|75814146\|ref\|ZP_00744780.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae V52],... gi\|146317596, gi... - gi\|75827741\|ref\|ZP_00757176.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae O395]...	247.0	[0..1]	[194..1]
tr\|D7HEP5\|D7HEP5... - 5-formyltetrahydrofolate cyclo-ligase OS=Vibrio cholerae RC385 GN=VCRC385_03467 PE=3 SV=1 gi\|116216720, gi... - gi\|75823519\|ref\|ZP_00753015.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae RC385...	246.0	[0..1]	[194..1]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	242.0	[0..2]	[194..3]
gi\|59712711, gi\|... - gi\|59712711\|ref\|YP_205487.1\| ligase [Vibrio fischeri ES114], gi\|59480812\|gb\|AAW86599.1\| predicted li...	241.0	[0..4]	[194..3]
gi\|254230209, gi... - gi\|75853743\|ref\|ZP_00761514.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio sp. Ex25], gi\|...	240.0	[0..1]	[194..1]
gi\|84376740, gi\|... - gi\|84390086\|ref\|ZP_00991348.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	240.0	[0..2]	[194..3]
gi\|86146375, gi\|... - gi\|86146375\|ref\|ZP_01064699.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	237.0	[0..2]	[194..3]
gi\|28807601 - gi\|28807601\|dbj\|BAC60854.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio pa... gi\|28899365, gi\|... - gi\|28899365\|ref\|NP_798970.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio p...	236.0	[0..7]	[194..13]
gi\|71280724, gi\|... - gi\|71280724\|ref\|YP_270316.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Colwellia psychre...	236.0	[0..3]	[194..2]

Back

Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDSRTHLRL QIRQRRQSLS AFEQQTASQQ LIHTFASLPE VTAAQRIALY LANDGELNTQ  60
   61 PLIEWLWQQG KQVYLPVLHP FAKGHLLFLH YHTHTPMNKN RYGIAEPKLD QRLICPVREL 120
  121 DIIGTPLVAF DQSGQRLGMG GGYYDRTLAP WFKTQQGAMP IGLAHDCQQV EQLPTASWDI 180
  181 PLRKIVTPSK VWQW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits