YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227082225, gi...
Organism:	Vibrio cholerae M66-2
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227082225, gi....

Description	E-value	Query Range	Subject Range
gi\|117622892, gi... - gi\|117622892\|ref\|YP_851805.1\| flavodoxin FldA [Escherichia coli APEC O1], gi\|115512016\|gb\|ABJ00091.1... gi\|237707346, gi... - gi\|237707346\|ref\|ZP_04537827.1\| flavodoxin FldA [Escherichia sp. 3_2_53FAA], gi\|226898556\|gb\|EEH8481... gi\|26246661, gi\|... - gi\|26246661\|ref\|NP_752701.1\| flavodoxin [Escherichia coli CFT073], gi\|26107060\|gb\|AAN79244.1\|AE01675... gi\|157065844, gi... - gi\|157160164\|ref\|YP_001457482.1\| flavodoxin FldA [Escherichia coli HS], gi\|157065844\|gb\|ABV05099.1\| ... gi\|188495523, gi... - gi\|188495523\|ref\|ZP_03002793.1\| flavodoxin [Escherichia coli 53638], gi\|188490722\|gb\|EDU65825.1\| fla... gi\|157157770, gi... - gi\|157157770\|ref\|YP_001461848.1\| flavodoxin FldA [Escherichia coli E24377A], gi\|157079800\|gb\|ABV1950... gi\|91071301, gi\|... - gi\|91209727\|ref\|YP_539713.1\| flavodoxin FldA [Escherichia coli UTI89], gi\|91071301\|gb\|ABE06182.1\| fl... gi\|110804679, gi... - gi\|110804679\|ref\|YP_688199.1\| flavodoxin FldA [Shigella flexneri 5 str. 8401], gi\|110614227\|gb\|ABF02...	181.0	[0..1]	[173..40]
gi\|21104364 - gi\|21104364\|dbj\|BAB93452.1\| flavodoxin [Actinobacillus actinomycetemcomitans]	180.0	[0..1]	[173..1]
gi\|88860195, gi\|... - gi\|88860195\|ref\|ZP_01134834.1\| flavodoxin [Pseudoalteromonas tunicata D2], gi\|88818189\|gb\|EAR28005.1...	180.0	[0..1]	[175..1]
gi\|52424915, gi\|... - gi\|52424915\|ref\|YP_088052.1\| flavodoxin FldA [Mannheimia succiniciproducens MBEL55E], gi\|52306967\|gb...	178.0	[0..1]	[173..1]
gi\|59479520, gi\|... - gi\|59711419\|ref\|YP_204195.1\| flavodoxin FldA [Vibrio fischeri ES114], gi\|59479520\|gb\|AAW85307.1\| fla... gi\|14587804 - gi\|14587804\|dbj\|BAB61721.1\| flavodoxin 1 [Vibrio fischeri] gi\|197317688, gi... - gi\|197336198\|ref\|YP_002155574.1\| flavodoxin [Vibrio fischeri MJ11], gi\|197317688\|gb\|ACH67135.1\| flav...	178.0	[0..1]	[175..1]
gi\|54308229, gi\|... - gi\|54308229\|ref\|YP_129249.1\| flavodoxin FldA [Photobacterium profundum SS9], gi\|46912657\|emb\|CAG1944...	178.0	[0..1]	[175..1]
gi\|42629140 - gi\|42629140\|ref\|ZP_00154689.1\| COG0716: Flavodoxins [Haemophilus influenzae R2846] gi\|42630494 - gi\|42630494\|ref\|ZP_00156033.1\| COG0716: Flavodoxins [Haemophilus influenzae R2866] gi\|144983098 - gi\|144983098\|gb\|EDJ90598.1\| flavodoxin [Haemophilus influenzae R3021] FLAV_HAEIN - Flavodoxin OS=Haemophilus influenzae GN=fldA PE=3 SV=2 gi\|148827330, gi... - gi\|148827330\|ref\|YP_001292083.1\| flavodoxin FldA [Haemophilus influenzae PittGG], gi\|148718572\|gb\|AB... FLAV_HAEIN - Flavodoxin OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fldA PE=3 SV=2 gi\|148825543, gi... - gi\|148825543\|ref\|YP_001290296.1\| flavodoxin FldA [Haemophilus influenzae PittEE], gi\|148715703\|gb\|AB... gi\|145271120, gi... - gi\|145639752\|ref\|ZP_01795354.1\| flavodoxin [Haemophilus influenzae PittII], gi\|145271120\|gb\|EDK11035... gi\|68056995, gi\|... - gi\|68248796\|ref\|YP_247908.1\| flavodoxin FldA [Haemophilus influenzae 86-028NP], gi\|68056995\|gb\|AAX87... gi\|145267099, gi... - gi\|145635626\|ref\|ZP_01791323.1\| flavodoxin [Haemophilus influenzae PittAA], gi\|145267099\|gb\|EDK07106... gi\|229811894, gi... - gi\|229845183\|ref\|ZP_04465317.1\| flavodoxin FldA [Haemophilus influenzae 6P18H1], gi\|229811894\|gb\|EEP... gi\|229847366, gi... - gi\|229847366\|ref\|ZP_04467467.1\| flavodoxin FldA [Haemophilus influenzae 7P49H1], gi\|229809692\|gb\|EEP... gi\|144985371, gi... - gi\|145633800\|ref\|ZP_01789524.1\| flavodoxin [Haemophilus influenzae 3655], gi\|144985371\|gb\|EDJ92201.1... gi\|145631313 - gi\|145631313\|ref\|ZP_01787085.1\| flavodoxin [Haemophilus influenzae 22.4-21] gi\|145628492, gi... - gi\|145628492\|ref\|ZP_01784292.1\| flavodoxin [Haemophilus influenzae 22.1-21], gi\|144978962\|gb\|EDJ8864...	178.0	[0..1]	[173..1]
gi\|75435990, gi\|... - gi\|75435990\|ref\|ZP_00733293.1\| flavodoxins [Actinobacillus succinogenes 130Z], gi\|74276000\|gb\|EAO496...	177.0	[0..1]	[173..1]
gi\|90327476, gi\|... - gi\|90411586\|ref\|ZP_01219596.1\| flavodoxin [Photobacterium profundum 3TCK], gi\|90327476\|gb\|EAS43829.1...	177.0	[0..1]	[175..1]
FLAV_KLEPN - Flavodoxin OS=Klebsiella pneumoniae GN=fldA PE=2 SV=2 gi\|152969271, gi... - gi\|152969271\|ref\|YP_001334380.1\| flavodoxin FldA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]... gi\|206576266, gi... - gi\|206576266\|ref\|YP_002239675.1\| flavodoxin [Klebsiella pneumoniae 342], gi\|206565324\|gb\|ACI07100.1\|...	177.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVGIFFGS DTGNTEAIAK MIQKQLGKKL VHVQDIAKSS KEDINNFDLL LLGIPTWYYG  60
   61 EAQCDWDDFF PELEAIDFST KLVAIFGCGD QEDYAEYFCD AMGTVRDIIQ AKGATIVGHW 120
  121 PTEGYEFEAS KALVDENHFV GLCIDEDRQP ELTEQRVTKW VNQVYEEMCL AELED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1ag9A
Description:	Flavodoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.0467816962267	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.85486974695416	bayes_pls_golite062009
binding	0.681337940863521	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.650874844500866	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
coenzyme binding	0.265571968246766	bayes_pls_golite062009
protein binding	0.251879151875848	bayes_pls_golite062009
FMN binding	0.056297096581433	bayes_pls_golite062009
cofactor binding	0.0451815885965905	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: