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View Structure Prediction Details

Protein: PS13A_ARATH
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PS13A_ARATH.

Description E-value Query
Range
Subject
Range
PSD13_BOVIN - 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1
262.0 [0..3] [384..4]
gi|73982052 - gi|73982052|ref|XP_848457.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13 (...
262.0 [0..3] [384..4]
gi|157502193, gi... - gi|3618343|dbj|BAA33214.1| 26S proteasome subunit p40.5 [Homo sapiens], gi|157502193|ref|NP_002808.3...
261.0 [0..3] [384..4]
gi|61372825, gi|... - gi|61372825|gb|AAX43919.1| proteasome 26S subunit 13 [synthetic construct], gi|32880133|gb|AAP88897....
260.0 [0..3] [384..4]
gi|125526148 - gi|125526148|gb|EAY74262.1| hypothetical protein OsI_02152 [Oryza sativa Indica Group]
gi|34914614, gi|... - gi|34914614|ref|NP_918654.1| putative 26S proteasome subunit [Oryza sativa (japonica cultivar-group)...
260.0 [0..3] [386..2]
PSD13_CHICK - 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1
259.0 [0..3] [384..4]
PSD13_RAT - 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1
258.0 [0..3] [384..4]

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Predicted Domain #1
Region A:
Residues: [1-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH  60
   61 NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI EKLRATKEPR ITEPIIYIET 120
  121 QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS 180
  181 ALLYLAYTSV ED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [193-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSESFKLDLA FDLSLSALLG ENIYNFGELL AHPILKSLLG TNVEWLYHIL QAFNHGDLVQ  60
   61 YQELCRVHNA SLIAQPALVE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEKKLLEKIN ILCLIEIIFS RPAEDRTIPL SIIAERTKLS IEDVEHLLMK SLSVHLIEGI  60
   61 IDQVNGTIYV SWAQPRVLGI PQIKALRDQL DSWVDKVHTT LLSVEAETPD LVAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1ufmA
Description: Solution structure of the PCI domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle