YRC Public Data Repository - Protein Structure Prediction

Protein:	PS13A_ARATH
Organism:	Arabidopsis thaliana
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PS13A_ARATH.

Description	E-value	Query Range	Subject Range
PSD13_BOVIN - 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1	262.0	[0..3]	[384..4]
gi\|73982052 - gi\|73982052\|ref\|XP_848457.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 13 (...	262.0	[0..3]	[384..4]
gi\|157502193, gi... - gi\|3618343\|dbj\|BAA33214.1\| 26S proteasome subunit p40.5 [Homo sapiens], gi\|157502193\|ref\|NP_002808.3...	261.0	[0..3]	[384..4]
gi\|61372825, gi\|... - gi\|61372825\|gb\|AAX43919.1\| proteasome 26S subunit 13 [synthetic construct], gi\|32880133\|gb\|AAP88897....	260.0	[0..3]	[384..4]
gi\|125526148 - gi\|125526148\|gb\|EAY74262.1\| hypothetical protein OsI_02152 [Oryza sativa Indica Group] gi\|34914614, gi\|... - gi\|34914614\|ref\|NP_918654.1\| putative 26S proteasome subunit [Oryza sativa (japonica cultivar-group)...	260.0	[0..3]	[386..2]
PSD13_CHICK - 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1	259.0	[0..3]	[384..4]
PSD13_RAT - 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1	258.0	[0..3]	[384..4]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALQYLESL KNTHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALAVFQ AGDALIQFYH  60
   61 NFITDFETKI NLLKLAHFAV VVSRQYSEKE AAVSYLESVI EKLRATKEPR ITEPIIYIET 120
  121 QKALFKLEQG DQKECKKILD DGKSSLDSMT DIDPSVYANF YWVSSQYHKC RQEFSDFYKS 180
  181 ALLYLAYTSV ED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSESFKLDLA FDLSLSALLG ENIYNFGELL AHPILKSLLG TNVEWLYHIL QAFNHGDLVQ  60
   61 YQELCRVHNA SLIAQPALVE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [273-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEKKLLEKIN ILCLIEIIFS RPAEDRTIPL SIIAERTKLS IEDVEHLLMK SLSVHLIEGI  60
   61 IDQVNGTIYV SWAQPRVLGI PQIKALRDQL DSWVDKVHTT LLSVEAETPD LVAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	1ufmA
Description:	Solution structure of the PCI domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits