YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229898118, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229898118, gi....

Description	E-value	Query Range	Subject Range
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	0.0	[1..247]	[1..247]
Y3775_PSE14 - Probable transcriptional regulatory protein PSPPH_3775 OS=Pseudomonas savastanoi pv. phaseolicola (s...	0.0	[1..247]	[1..247]
Y1407_PSEU2 - Probable transcriptional regulatory protein Psyr_1407 OS=Pseudomonas syringae pv. syringae (strain B... tr\|F3G1F8\|F3G1F8... - Probable transcriptional regulatory protein PSYPI_00070 OS=Pseudomonas syringae pv. pisi str. 1704B ...	0.0	[1..247]	[1..247]
Y3980_PSESM, Y3I... - (Q87Y32) Hypothetical UPF0082 protein PSPTO3980, UPF0082 protein PSPTO_3980 OS=Pseudomonas syringae ... Y3980_PSESM - Probable transcriptional regulatory protein PSPTO_3980 OS=Pseudomonas syringae pv. tomato (strain DC...	0.0	[1..247]	[1..247]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	0.0	[1..247]	[1..247]
Y2109_PHOLL, YL0... - (Q7N550) Hypothetical UPF0082 protein plu2109, UPF0082 protein plu2109 OS=Photorhabdus luminescens s... Y2109_PHOLL - Probable transcriptional regulatory protein plu2109 OS=Photorhabdus luminescens subsp. laumondii (st...	0.0	[1..247]	[1..247]
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	0.0	[1..247]	[1..246]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	0.0	[1..247]	[1..246]
Y2494_ERWCT - UPF0082 protein ECA2494 OS=Erwinia carotovora subsp. atroseptica GN=ECA2494 PE=3 SV=1 Y2494_PECAS - Probable transcriptional regulatory protein ECA2494 OS=Pectobacterium atrosepticum (strain SCRI 1043...	0.0	[1..247]	[1..247]
Y4766_PSEF5 - Probable transcriptional regulatory protein PFL_4766 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	0.0	[1..247]	[1..247]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSKWANT KHRKAAQDAK RGKIFTKIIR ELVTAARLGG GDPGANPRLR AAIDKALSNN  60
   61 MTRDTLNRAI ARGVGGDEDN NMETIIYEGY GPGGTAVMVE CLSDNRNRTV SEVRHAFTKT 120
  121 GGNLGTDGSV SYLFTKKGVI SYAPGLEEDT VMDAALEAGA DDIVVYDDGA IDVFTAWESL 180
  181 GAVKDALDAT GLVAEGAEVS LIPSTKAELD AETAPKLLRL IDMLEDSDDV QEVYHNGEIS 240
  241 DEVAATL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	104.0
Match:	1konA
Description:	Hypothetical protein YebC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits