YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253732697, gi...
Organism:	Staphylococcus aureus subsp. aureus TCH130
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253732697, gi....

Description	E-value	Query Range	Subject Range
gi\|23099450, gi\|... - gi\|23099450\|ref\|NP_692916.1\| putative monovalent cation/H+ antiporter subunit E [Oceanobacillus ihey...	164.0	[0..1]	[156..1]
MRPE_BACSU - Na(+)/H(+) antiporter subunit E OS=Bacillus subtilis GN=mrpE PE=1 SV=1 gi\|50812287, gi\|... - gi\|50812287\|ref\|YP_054591.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus subtilis s...	162.0	[0..1]	[156..1]
gi\|15613878, gi\|... - gi\|15613878\|ref\|NP_242181.1\| putative monovalent cation/H+ antiporter subunit E [Bacillus halodurans... gi\|25345883 - pir\|\|C83814 Na+/H+ antiporter BH1315 [imported] - Bacillus halodurans (strain C-125)	162.0	[0..1]	[156..1]
gi\|154163172 - gi\|154163172\|gb\|ABS70477.1\| MrpE [synthetic construct] MRPE_BACPE - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus (strain OF4) GN=mrpE PE=1 SV=1 gi\|6650387 - gi\|6650387\|gb\|AAF21816.1\|AF097740_5 multiple resistance and pH regulation related protein E [Bacillu... MRPE_BACPF - Na(+)/H(+) antiporter subunit E OS=Bacillus pseudofirmus GN=mrpE PE=1 SV=1	159.0	[0..1]	[156..1]
MNHE1_STAS1 - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 1...	157.0	[0..1]	[158..1]
gi\|39997437, gi\|... - gi\|39997437\|ref\|NP_953388.1\| putative monovalent cation/H+ antiporter subunit E [Geobacter sulfurred...	156.0	[0..5]	[157..4]
gi\|251810321, gi... - gi\|251810321\|ref\|ZP_04824794.1\| CPA3 family monovalent cation:proton (H+) antiporter-3 subunit E [St... MNHE1_STAES - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mnhE1 PE=3 SV=... MNHE1_STAEQ - Na(+)/H(+) antiporter subunit E1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mnhE1 ...	155.0	[0..1]	[158..1]
gi\|91711226, gi\|... - gi\|91772211\|ref\|YP_564903.1\| putative monovalent cation/H+ antiporter subunit E [Methanococcoides bu...	155.0	[0..1]	[158..1]
gi\|21241232, gi\|... - gi\|21241232\|ref\|NP_640814.1\| putative monovalent cation/H+ antiporter subunit E [Xanthomonas axonopo...	155.0	[0..7]	[157..17]
gi\|68189865, gi\|... - gi\|69279609\|ref\|ZP_00614415.1\| Protein of unknown function DUF68 [Mesorhizobium sp. BNC1], gi\|681898...	155.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQLVLNFI IAVFWLFVTN SYTTNNFVLG FIFGLVLVYL LHRVLPGRFY VITLYRIIKL  60
   61 VIIFLIELIK ANFDVLKIII KPSIKNEPGF FVYHTDLKKD WQIVLLSNLI TLTPGTVVLG 120
  121 VSDDRTKIYI HAIDFSTKEQ EVESIKTSLE KIVREVGEI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.958607
Match:	PF01899.7
Description:	No description for PF01899.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits