YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229896373, gi...
Organism:	Yersinia pestis Pestoides A
Length:	511 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229896373, gi....

Description	E-value	Query Range	Subject Range
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	5.0E-75	[6..505]	[595..1095]
gi\|46107656, gi\|... - gi\|46107656\|ref\|XP_380887.1\| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi\|42547814\|gb\|E...	5.0E-74	[28..504]	[1460..1938]
gi\|70725707, gi\|... - gi\|70725707\|ref\|YP_252621.1\| hypothetical protein SH0706 [Staphylococcus haemolyticus JCSC1435], gi\|...	1.0E-67	[11..507]	[179..672]
gi\|251804540, gi... - gi\|251811941\|ref\|ZP_04826414.1\| MFS family major facilitator transporter, multidrug:cation symporter... gi\|57636029, gi\|... - gi\|57865371\|ref\|YP_189502.1\| EmrB/QacA family drug resistance transporter [Staphylococcus epidermidi...	3.0E-59	[11..510]	[151..647]
gi\|27316398, gi\|... - gi\|27468850\|ref\|NP_765487.1\| multidrug resistance protein [Staphylococcus epidermidis ATCC 12228], g...	5.0E-59	[11..510]	[151..647]
gi\|49648930 - gi\|49648930\|emb\|CAG81254.1\| YALI0D20196p [Yarrowia lipolytica] gi\|50551177, gi\|... - gi\|50551177\|ref\|XP_503062.1\| YALI0D20196p [Yarrowia lipolytica], gi\|49648930\|emb\|CAG81254.1\| unnamed...	4.0E-57	[6..510]	[61..562]
gi\|116200341, gi... - gi\|88179605\|gb\|EAQ87073.1\| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51], gi\|1162...	7.0E-57	[3..496]	[145..638]
gi\|21225257, gi\|... - gi\|7649556\|emb\|CAB89031.1\| putative membrane transport protein. [Streptomyces coelicolor A3(2)], gi\|...	4.0E-56	[3..509]	[23..526]
gi\|73661859, gi\|... - gi\|73661859\|ref\|YP_300640.1\| major facilitator superfamily permease [Staphylococcus saprophyticus su...	7.0E-56	[14..500]	[140..623]
gi\|227246668, gi... - gi\|227556810\|ref\|ZP_03986857.1\| MFS family major facilitator transporter, multidrug:cation symporter... gi\|49242696, gi\|... - gi\|49484567\|ref\|YP_041791.1\| putative transport protein [Staphylococcus aureus subsp. aureus MRSA252... gi\|227852817, gi... - gi\|227898871\|ref\|ZP_04016676.1\| MFS family major facilitator transporter, multidrug:cation symporter...	2.0E-55	[11..508]	[140..634]

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Predicted Domain #1

Region A:
Residues: [1-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKPLEGAP LAWMTVALSL ATFMQVLDST IANVAIPTIA GDLGSSNSQG TWVITSFGVA  60
   61 NAISIPVTGW LAKRVGEVRL FLWSTGLFVL ASWLCGMSNS LGMLIFFRVI QGLVAGPLIP 120
  121 LSQSLLLNNY PPAKRSMALA LWSMTIVVAP IFGPILGGYI SDNYHWGWIF FINIPIGLVV 180
  181 VLLAGSTLKG RETKTEIRPI DTIGLVLLVV GIGALQIMLD QGKELDWFNS TEIIVLTVVA 240
  241 VVAITFLIVW ELTDDHPVID LSLFKSRNFT IGCLCLSLAY MLYFGAIVLL PQLLQEVYGY 300
  301 TATWAGLASA PVGILPVLLS PLIGRFAHRI DMRQLVTFSF IMYAVCFYWR AYTFEPGMDF 360
  361 GASAWPQFFQ GFAIACFFMP LTTITLSGLP PERMAAASSL SNFMRTLAGS IGTSITTTLW 420
  421 TQRESLHHAQ LTEFVNPYNP NATQAYQELE KLGMSQQQAS AYLAREITNQ GLIISANEIF 480
  481 WLSAGVFLML LALIWFARPP FTSGGGGGGA H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	2.54286095434601	bayes_pls_golite062009
transmembrane transporter activity	2.01247278444729	bayes_pls_golite062009
substrate-specific transporter activity	1.77039368764865	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.66673693200184	bayes_pls_golite062009
active transmembrane transporter activity	0.33203350453105	bayes_pls_golite062009
polyol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.2309068592963	bayes_pls_golite062009
ion transmembrane transporter activity	0.18188709249385	bayes_pls_golite062009
binding	0.105551689569449	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	1.26964387230144E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: