YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227213107, gi...
Organism:	Bifidobacterium longum subsp. longum ATCC 55813
Length:	57 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227213107, gi....

Description	E-value	Query Range	Subject Range
RL332_SALTO - 50S ribosomal protein L33 2 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rp...	81.0	[0..3]	[57..1]
gi\|84384328, gi\|... - gi\|84494835\|ref\|ZP_00993954.1\| 50S ribosomal protein L33 [Janibacter sp. HTCC2649], gi\|84384328\|gb\|E...	79.0	[0..3]	[57..1]
RK33_CYAPA - 50S ribosomal protein L33, cyanelle OS=Cyanophora paradoxa GN=rpl33 PE=3 SV=1	78.0	[0..3]	[57..1]
RL332_MYCTU - 50S ribosomal protein L33 2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=rpmG2 PE=1 ... RL332_MYCTU, R33... - 50S ribosomal protein L33 2 OS=Mycobacterium tuberculosis GN=rpmG2 PE=3 SV=1, (P96925) 50S ribosomal... gi\|81255494, gi\|... - gi\|81255494\|ref\|ZP_00879970.1\| COG0267: Ribosomal protein L33 [Mycobacterium tuberculosis C], gi\|254... gi\|215425871 - gi\|215425871\|ref\|ZP_03423790.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis T92] gi\|123214190, gi... - gi\|76785658\|ref\|ZP_00772823.1\| COG0267: Ribosomal protein L33 [Mycobacterium tuberculosis F11], gi\|1... gi\|215402409 - gi\|215402409\|ref\|ZP_03414590.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis 02_1987] RL332_MYCBO - 50S ribosomal protein L33 2 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=rpmG2 PE=3 S... RL331_MYCBP - 50S ribosomal protein L33 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpmG1 PE=3 SV=1 RL332_MYCBO - 50S ribosomal protein L33 2 OS=Mycobacterium bovis GN=rpmG2 PE=3 SV=1 gi\|197739405, gi... - gi\|254363588\|ref\|ZP_04979634.1\| 50S ribosomal protein L33 rpmG2 [Mycobacterium tuberculosis str. Haa... RL331_MYCTA - 50S ribosomal protein L33 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpmG1 PE=3 ... RL332_MYCTO - 50S ribosomal protein L33 2 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=rpmG2 PE=3 ... gi\|240169408 - gi\|240169408\|ref\|ZP_04748067.1\| 50S ribosomal protein L33 [Mycobacterium kansasii ATCC 12478] gi\|253797574, gi... - gi\|253797574\|ref\|YP_003030575.1\| 50S ribosomal protein L33 rpmG2 [Mycobacterium tuberculosis KZN 143... gi\|254549594 - gi\|254549594\|ref\|ZP_05140041.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis '98-R604 INH-R... gi\|254817187 - gi\|254817187\|ref\|ZP_05222188.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis KZN 4207] gi\|254823022 - gi\|254823022\|ref\|ZP_05228023.1\| 50S ribosomal protein L33 [Mycobacterium intracellulare ATCC 13950] gi\|255098161 - gi\|255098161\|ref\|ZP_05327639.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis KZN 605] gi\|215444753 - gi\|215444753\|ref\|ZP_03431505.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis T85] gi\|215429469 - gi\|215429469\|ref\|ZP_03427388.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis EAS054] gi\|219556478 - gi\|219556478\|ref\|ZP_03535554.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis T17] gi\|218752282 - gi\|218752282\|ref\|ZP_03531078.1\| 50S ribosomal protein L33 [Mycobacterium tuberculosis GM 1503] gi\|224772140, gi... - gi\|224989027\|ref\|YP_002643714.1\| 50S ribosomal protein L33 [Mycobacterium bovis BCG str. Tokyo 172],...	78.0	[0..3]	[57..1]
RL332_MYCPA - 50S ribosomal protein L33 2 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=rpmG2 ... RL332_MYCPA - 50S ribosomal protein L33 2 OS=Mycobacterium paratuberculosis GN=rpmG2 PE=3 SV=1 gi\|254776963 - gi\|254776963\|ref\|ZP_05218479.1\| 50S ribosomal protein L33 [Mycobacterium avium subsp. avium ATCC 252... RL331_MYCA1 - 50S ribosomal protein L33 1 OS=Mycobacterium avium (strain 104) GN=rpmG1 PE=3 SV=2	78.0	[0..3]	[57..1]
RL33_ACIC1 - 50S ribosomal protein L33 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpmG PE=3 SV=1	78.0	[0..3]	[57..1]
gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|183218810, gi... - gi\|183601925\|ref\|ZP_02963294.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis HN... gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|240248807, gi... - gi\|241190415\|ref\|YP_002967809.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis B... gi\|241195821, gi... - gi\|241195821\|ref\|YP_002969376.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis D...	78.0	[0..5]	[57..4]
gi\|154084579, gi... - gi\|154486716\|ref\|ZP_02028123.1\| hypothetical protein BIFADO_00540 [Bifidobacterium adolescentis L2-3... gi\|283455344\|ref... - rpmG LSU ribosomal protein L33P [Bifidobacterium dentium Bd1] gi\|225351080, gi... - gi\|225351080\|ref\|ZP_03742103.1\| hypothetical protein BIFPSEUDO_02663 [Bifidobacterium pseudocatenula... RL33_BIFAA - 50S ribosomal protein L33 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 1181... gi\|212660352, gi... - gi\|212716648\|ref\|ZP_03324776.1\| hypothetical protein BIFCAT_01578 [Bifidobacterium catenulatum DSM 1... gi\|171741296, gi... - gi\|171741296\|ref\|ZP_02917103.1\| hypothetical protein BIFDEN_00372 [Bifidobacterium dentium ATCC 2767... gi\|85666393 - gi\|85666393\|ref\|ZP_01028617.1\| hypothetical protein Badol_01001236 [Bifidobacterium adolescentis]	77.0	[0..5]	[57..4]
RL331_RHOJR - 50S ribosomal protein L33 1 OS=Rhodococcus jostii (strain RHA1) GN=rpmG1 PE=3 SV=1 gi\|226305201, gi... - gi\|226305201\|ref\|YP_002765159.1\| 50S ribosomal protein L33 [Rhodococcus erythropolis PR4], gi\|226184... gi\|229322391, gi... - gi\|229490571\|ref\|ZP_04384409.1\| ribosomal protein L33 [Rhodococcus erythropolis SK121], gi\|229322391...	77.0	[0..3]	[57..1]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMAKSADIR PGITLACTEC KERNYITTKN RRNTPDRLEL KKFCPRCGKQ TVHRETR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits