YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253974297, gi...
Organism:	Escherichia coli B str. REL606
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253974297, gi....

Description	E-value	Query Range	Subject Range
CYSZ_SHIBS - Sulfate transporter CysZ OS=Shigella boydii serotype 4 (strain Sb227) GN=cysZ PE=3 SV=1 CYSZ_SHIF8 - Sulfate transporter CysZ OS=Shigella flexneri serotype 5b (strain 8401) GN=cysZ PE=3 SV=1 gi\|30063807, gi\|... - gi\|30063807\|ref\|NP_837978.1\| putative sulfate transport protein CysZ [Shigella flexneri 2a str. 2457...	251.0	[0..1]	[253..1]
CYSZ_SHIDS - Sulfate transporter CysZ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysZ PE=3 SV=1	251.0	[0..1]	[253..1]
CYSZ_ERWCT - Protein CysZ homolog OS=Erwinia carotovora subsp. atroseptica GN=cysZ PE=3 SV=1 CYSZ_PECAS - Sulfate transporter CysZ OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=cysZ PE...	251.0	[0..3]	[252..21]
CYSZ_ECO24 - Sulfate transporter CysZ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysZ PE=3 SV=1	250.0	[0..1]	[253..1]
gi\|193066725, gi... - gi\|75255084\|ref\|ZP_00726984.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... gi\|194411262, gi... - gi\|75207918\|ref\|ZP_00708366.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... CYSZ_ECOSE - Sulfate transporter CysZ OS=Escherichia coli (strain SE11) GN=cysZ PE=3 SV=1 CYSZ_ECO55 - Sulfate transporter CysZ OS=Escherichia coli (strain 55989 / EAEC) GN=cysZ PE=3 SV=1	250.0	[0..1]	[253..1]
CYSZ_ECO81 - Sulfate transporter CysZ OS=Escherichia coli O81 (strain ED1a) GN=cysZ PE=3 SV=1 CYSZ_ECOL5 - Sulfate transporter CysZ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysZ PE=3 SV=1 CYSZ_ECOL6 - Sulfate transporter CysZ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cysZ PE=3... CYSZ_ECOL6 - Protein CysZ OS=Escherichia coli O6 GN=cysZ PE=3 SV=1 gi\|227887459, gi... - gi\|227887459\|ref\|ZP_04005264.1\| sulfate transport protein CysZ [Escherichia coli 83972], gi\|22783580...	249.0	[0..1]	[253..1]
gi\|24052836, gi\|... - gi\|24113758\|ref\|NP_708268.1\| putative sulfate transport protein CysZ [Shigella flexneri 2a str. 301]... CYSZ_SHIFL - Sulfate transporter CysZ OS=Shigella flexneri GN=cysZ PE=3 SV=1	249.0	[0..1]	[253..1]
gi\|72442, gi\|153934 - pir\|\|BVEBCZ cysZ protein - Salmonella typhimurium, gi\|153934\|gb\|AAA27050.1\| cysZ protein gi\|153934\|gb\|AAA... - cysZ protein lcl\|NC_016856.1_... - [gene=cysZ] [protein=putative sulfate transport protein CysZ] [protein_id=YP_005238512.1] [location=...	248.0	[0..1]	[253..38]
gi\|110180269 - gi\|110180269\|gb\|ABG54377.1\| CysZ [Klebsiella pneumoniae]	241.0	[0..1]	[253..10]
gi\|238785573, gi... - gi\|77956840\|ref\|ZP_00820916.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [Y...	241.0	[0..10]	[248..11]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSFTSAPR SGFYYFAQGW KLVSQPGIRR FVILPLLVNI LLMGGAFWWL FTQLDVWIPT  60
   61 LMSYVPDWLQ WLSYLLWPLA VISVLLVFGY FFSTIANWIA APFNGLLAEQ LEARLTGATP 120
  121 PDT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIFGIMKDVP RIMKREWQKF AWYLPRAIVL LILYFIPGIG QTVAPVLWFL FSAWMLAIQY  60
   61 CDYPFDNHKV PFKEMRTALR TRKITNMQFG ALTSLFTMIP LLNLFIMPVA VCGATAMWVD 120
  121 CYRDKHAMWR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits