YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253315701
Organism:	Staphylococcus aureus subsp. aureus str. CF-Marseille
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253315701.

Description	E-value	Query Range	Subject Range
ACPS_STAEQ - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ac... ACPS_STAEP - (Q8CNK6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... ACPS_STAES - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=acpS PE=3 ...	152.0	[0..1]	[117..1]
ACPS_STAAU - (Q9ZAH6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... gi\|221141593 - gi\|221141593\|ref\|ZP_03566086.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... gi\|221137313 - gi\|221137313\|ref\|ZP_03562122.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAC - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain COL) GN=acpS PE=1 SV=1 ACPS_STAAT - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=acpS PE=3... gi\|87126430\|gb\|A... - holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. aureus USA300], holo-(acyl-carrie... gi\|253731092, gi... - gi\|253731092\|ref\|ZP_04865257.1\| holo-(acyl-carrier-protein) synthase [Staphylococcus aureus subsp. a... ACPS_STAAE - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Newman) GN=acpS PE=3 SV=1 ACPS_STAA3 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain USA300) GN=acpS PE=3 SV=1 ACPS_STAA8 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain NCTC 8325) GN=acpS PE=3 SV=1	152.0	[0..1]	[119..1]
gi\|221086403, gi... - gi\|221086403\|ref\|ZP_03555945.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC61], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus (strain HTA426) GN=acpS PE=3 SV=1 gi\|229499573, gi... - gi\|229499573\|ref\|ZP_04393256.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC52], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus GN=acpS PE=3 SV=1	146.0	[0..1]	[116..1]
ACPS_STAS1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain AT...	142.0	[0..1]	[115..1]
ACPS_EXIS2 - Holo-[acyl-carrier-protein] synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 25...	142.0	[0..1]	[118..1]
ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=acpS PE=... ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis GN=acpS PE=3 SV=1	141.0	[0..1]	[117..1]
ACPS_LACLM - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=acpS P... ACPS_LACLS - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=acpS PE=...	141.0	[0..1]	[117..1]
ACPS_BACC3 - Holo-[acyl-carrier-protein] synthase OS=Bacillus cereus (strain 03BB102) GN=acpS PE=3 SV=1 ACPS_BACHK - Holo-[acyl-carrier-protein] synthase OS=Bacillus thuringiensis subsp. konkukian GN=acpS PE=3 SV=1 gi\|170668318, gi... - gi\|170687791\|ref\|ZP_02879006.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0465]... gi\|170127192, gi... - gi\|170707834\|ref\|ZP_02898284.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0389]... gi\|177653365, gi... - gi\|177653365\|ref\|ZP_02935575.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0174]... gi\|190561542, gi... - gi\|190567415\|ref\|ZP_03020329.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis Tsiankovski... gi\|196036030, gi... - gi\|196036030\|ref\|ZP_03103431.1\| holo-(acyl-carrier-protein) synthase [Bacillus cereus W], gi\|1959913... gi\|196028069, gi... - gi\|196041134\|ref\|ZP_03108430.1\| holo-(acyl-carrier-protein) synthase [Bacillus cereus NVH0597-99], g... gi\|196022991, gi... - gi\|196046246\|ref\|ZP_03113473.1\| holo-(acyl-carrier-protein) synthase [Bacillus cereus 03BB108], gi\|1... ACPS_BACC0 - Holo-[acyl-carrier-protein] synthase OS=Bacillus cereus (strain AH820) GN=acpS PE=3 SV=1 ACPS_BACAN - Holo-[acyl-carrier-protein] synthase OS=Bacillus anthracis GN=acpS PE=1 SV=1 ACPS_BACAH - Holo-[acyl-carrier-protein] synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=acpS PE=3 SV=1 gi\|254756957 - gi\|254756957\|ref\|ZP_05208985.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. Australi... gi\|254754914 - gi\|254754914\|ref\|ZP_05206949.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. Vollum] gi\|254739715 - gi\|254739715\|ref\|ZP_05197408.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. Kruger B... gi\|254734930 - gi\|254734930\|ref\|ZP_05192642.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. Western ... gi\|165871559, gi... - gi\|165871559\|ref\|ZP_02216205.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0488]... gi\|254723568 - gi\|254723568\|ref\|ZP_05185355.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. A1055] gi\|167634179, gi... - gi\|167634179\|ref\|ZP_02392501.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0442]... gi\|254686592 - gi\|254686592\|ref\|ZP_05150451.1\| 4'-phosphopantetheinyl transferase [Bacillus anthracis str. CNEVA-90... gi\|167640318, gi... - gi\|167640318\|ref\|ZP_02398583.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. A0193]... ACPS_BACAA - Holo-[acyl-carrier-protein] synthase OS=Bacillus anthracis (strain A0248) GN=acpS PE=3 SV=1 gi\|65317678, gi\|... - gi\|65317678\|ref\|ZP_00390637.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Bacillu... gi\|228600832, gi... - gi\|229182637\|ref\|ZP_04309882.1\| Holo-[acyl-carrier-protein] synthase [Bacillus cereus BGSC 6E1], gi\|... gi\|229119906, gi... - gi\|229119906\|ref\|ZP_04249164.1\| Holo-[acyl-carrier-protein] synthase [Bacillus cereus 95/8201], gi\|2... gi\|229089373, gi... - gi\|229089373\|ref\|ZP_04220648.1\| Holo-[acyl-carrier-protein] synthase [Bacillus cereus Rock3-42], gi\|... gi\|228944048, gi... - gi\|228944048\|ref\|ZP_04106431.1\| Holo-[acyl-carrier-protein] synthase [Bacillus thuringiensis serovar... ACPS_BACHK - Holo-[acyl-carrier-protein] synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=ac... gi\|228827922, gi... - gi\|228931742\|ref\|ZP_04094643.1\| Holo-[acyl-carrier-protein] synthase [Bacillus thuringiensis serovar... gi\|49183269, gi\|... - gi\|49183269\|ref\|YP_026521.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. Sterne], ... gi\|228834158, gi... - gi\|228925496\|ref\|ZP_04088589.1\| Holo-[acyl-carrier-protein] synthase [Bacillus thuringiensis serovar... gi\|47525507, gi\|... - gi\|47525507\|ref\|YP_016856.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. 'Ames Anc... gi\|228912980, gi... - gi\|228912980\|ref\|ZP_04076624.1\| Holo-[acyl-carrier-protein] synthase [Bacillus thuringiensis serovar... gi\|30260426, gi\|... - gi\|30260426\|ref\|NP_842803.1\| holo-(acyl-carrier-protein) synthase [Bacillus anthracis str. Ames], gi... ACPS_BACAC - Holo-[acyl-carrier-protein] synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=acpS PE=3...	139.0	[0..1]	[118..1]
ACPS_BACCZ - Holo-[acyl-carrier-protein] synthase OS=Bacillus cereus (strain ZK / E33L) GN=acpS PE=3 SV=1	139.0	[0..1]	[118..1]
ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia GN=acpS PE=3 SV=1 ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A9... gi\|77414521, gi\|... - gi\|77414521\|ref\|ZP_00790667.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae 515], ... gi\|77161538, gi\|... - gi\|77412403\|ref\|ZP_00788711.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae CJB111... gi\|77172390, gi\|... - gi\|77409006\|ref\|ZP_00785726.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae COH1],... ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=acp... gi\|77406431, gi\|... - gi\|77406431\|ref\|ZP_00783489.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae H36B],... ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2...	139.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHGIGVDLI EIDRIKVLYS KQPKLVERIL TKNEQHKFNN FTHEQRKIEF LAGRFATKEA  60
   61 FSKALGTGLG KHVAFNDIDC YNDELGKPKI DYEGFIVHVS ISHTEHYAMS QVVLEKSAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: