YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254592108, gi...
Organism:	Escherichia coli O157:H7 str. TW14359
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254592108, gi....

Description	E-value	Query Range	Subject Range
gi\|1246361 - gi\|1246361\|gb\|AAA93511.1\| thymidine:thymidylate kinase:zeocin resistance fusion protein [Cloning vec...	296.0	[0..1]	[205..1]
gi\|254288127, gi... - gi\|254288127\|ref\|YP_003053875.1\| thymidine kinase [Escherichia coli BL21(DE3)], gi\|253977434\|gb\|ACT4... gi\|75195387, gi\|... - gi\|75195387\|ref\|ZP_00705457.1\| COG1435: Thymidine kinase [Escherichia coli HS], gi\|157160745\|ref\|YP_... gi\|251784744, gi... - gi\|251784744\|ref\|YP_002999048.1\| hypothetical protein B21_01224 [Escherichia coli BL21], gi\|24237701... gi\|194436990, gi... - gi\|83587378\|ref\|ZP_00926006.1\| COG1435: Thymidine kinase [Escherichia coli 101-1], gi\|194436990\|ref\|... gi\|254161319, gi... - gi\|254161319\|ref\|YP_003044427.1\| thymidine kinase [Escherichia coli B str. REL606], gi\|253973220\|gb\|...	294.0	[0..1]	[205..1]
gi\|218558166, gi... - gi\|218558166\|ref\|YP_002391079.1\| thymidine kinase [Escherichia coli S88], gi\|218364935\|emb\|CAR02631.... gi\|215264546, gi... - gi\|215486474\|ref\|YP_002328905.1\| thymidine kinase [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|227836537, gi... - gi\|227886333\|ref\|ZP_04004138.1\| thymidine kinase [Escherichia coli 83972], gi\|227836537\|gb\|EEJ47003.... gi\|218704761, gi... - gi\|218704761\|ref\|YP_002412280.1\| thymidine kinase [Escherichia coli UMN026], gi\|218431858\|emb\|CAR127... gi\|237705202, gi... - gi\|237705202\|ref\|ZP_04535683.1\| thymidine kinase/deoxyuridine kinase [Escherichia sp. 3_2_53FAA], gi... gi\|218699944, gi... - gi\|218699944\|ref\|YP_002407573.1\| thymidine kinase [Escherichia coli IAI39], gi\|218369930\|emb\|CAR1770... KITH_ECOL6 - Thymidine kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tdk PE=3 SV=1 gi\|170680630, gi... - gi\|170680630\|ref\|YP_001743956.1\| thymidine kinase [Escherichia coli SMS-3-5], gi\|170518348\|gb\|ACB165... KITH_ECOL6 - Thymidine kinase OS=Escherichia coli O6 GN=tdk PE=3 SV=1 gi\|91210461, gi\|... - gi\|91210461\|ref\|YP_540447.1\| thymidine kinase [Escherichia coli UTI89], gi\|91072035\|gb\|ABE06916.1\| t... gi\|117623453, gi... - gi\|117623453\|ref\|YP_852366.1\| thymidine kinase [Escherichia coli APEC O1], gi\|115512577\|gb\|ABJ00652.... gi\|75242039, gi\|... - gi\|75242039\|ref\|ZP_00725833.1\| COG1435: Thymidine kinase [Escherichia coli F11], gi\|191171003\|ref\|ZP... gi\|110641467, gi... - gi\|110641467\|ref\|YP_669197.1\| thymidine kinase [Escherichia coli 536], gi\|110343059\|gb\|ABG69296.1\| t...	294.0	[0..1]	[205..1]
gi\|25287020 - gi\|25287020\|pir\|\|C85704 thymidine kinase (EC 2.7.1.21) [similarity] - Escherichia coli (strain O157:... gi\|12514959, gi\|... - gi\|15801466\|ref\|NP_287483.1\| thymidine kinase [Escherichia coli O157:H7 EDL933], gi\|12514959\|gb\|AAG5...	293.0	[0..1]	[205..1]
KITH_SHIDS - Thymidine kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tdk PE=3 SV=1	293.0	[0..1]	[205..1]
KITH_ECOLI - Thymidine kinase (EC 2.7.1.21) - Escherichia coli EG10994 - thymidine kinase /deoxyuridine kinase / Deoxythymidine kinase gi\|238863658, gi... - gi\|238900471\|ref\|YP_002926267.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli BW2952], gi\|... gi\|89108084, gi\|... - gi\|89108084\|ref\|AP_001864.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli str. K-12 substr... gi\|170080867, gi... - gi\|170080867\|ref\|YP_001730187.1\| thymidine kinase/deoxyuridine kinase [Escherichia coli str. K-12 su... gi\|188490967, gi... - gi\|75511732\|ref\|ZP_00734361.1\| COG1435: Thymidine kinase [Escherichia coli 53638], gi\|188495768\|ref\|... EG10994 - thymidine kinase /deoxyuridine kinase / Deoxythymidine kinase	293.0	[0..1]	[205..1]
gi\|168237804, gi... - gi\|197289233\|gb\|EDY28600.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|205339364, gi... - gi\|205339364\|gb\|EDZ26128.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|194444867, gi... - gi\|194444867\|ref\|YP_002041002.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Newpo... gi\|194447389, gi... - gi\|194447389\|ref\|YP_002045795.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Heide... gi\|167553694, gi... - gi\|205321914\|gb\|EDZ09753.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|167994656, gi... - gi\|205327514\|gb\|EDZ14278.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar 4,[5],12:i... KITH_SALTY - Thymidine kinase OS=Salmonella typhimurium GN=tdk PE=3 SV=1 gi\|213584663 - gi\|213584663\|ref\|ZP_03366489.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213622854 - gi\|213622854\|ref\|ZP_03375637.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... KITH_SALPA - Thymidine kinase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=tdk PE=3 SV=1 gi\|213650447 - gi\|213650447\|ref\|ZP_03380500.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|214002677 - gi\|214002677\|ref\|ZP_03413412.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|199602159, gi... - gi\|200389714\|ref\|ZP_03216325.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Vircho... gi\|213021296 - gi\|213021296\|ref\|ZP_03335743.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|238913652 - gi\|238913652\|ref\|ZP_04657489.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Tennes... gi\|213052126 - gi\|213052126\|ref\|ZP_03345004.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|213426170 - gi\|213426170\|ref\|ZP_03358920.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi ... gi\|194735022, gi... - gi\|194735022\|ref\|YP_002114781.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Schwa... gi\|197213552, gi... - gi\|197249849\|ref\|YP_002146278.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Agona... gi\|197263198, gi... - gi\|197263198\|ref\|ZP_03163272.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Saintp... gi\|197362251, gi... - gi\|197362251\|ref\|YP_002141888.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Parat... KITH_SALTY - Thymidine kinase OS=Salmonella typhimurium GN=tdk PE=3 SV=1 lcl\|NC_016856.1_... - [gene=tdk_2] [protein=thymidine kinase] [protein_id=YP_005237676.1] [location=complement(1856692..18... KITH_SALPA - Thymidine kinase OS=Salmonella paratyphi A GN=tdk PE=3 SV=1 gi\|87312663 - gi\|87312663\|gb\|ABD37697.1\| thymidine kinase [synthetic construct] KITH_SALTI - Thymidine kinase OS=Salmonella typhi GN=tdk PE=3 SV=1 gi\|29142096, gi\|... - gi\|29142096\|ref\|NP_805438.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|16760133 - gi\|16760133\|ref\|NP_455750.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Typhi str... KITH_SALTI - Thymidine kinase OS=Salmonella typhi GN=tdk PE=3 SV=1 KITH_SALTY - Thymidine kinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=tdk PE=3 SV=1	290.0	[0..1]	[204..1]
KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis GN=tdk PE=3 SV=1 gi\|224583758, gi... - gi\|224583758\|ref\|YP_002637556.1\| thymidine kinase [Salmonella enterica subsp. enterica serovar Parat... KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis (strain SC-B67) GN=tdk PE=3 SV=1 KITH_SALCH - Thymidine kinase OS=Salmonella choleraesuis GN=tdk PE=3 SV=1	289.0	[0..1]	[204..1]
gi\|238718765, gi... - gi\|77960742\|ref\|ZP_00824600.1\| COG1435: Thymidine kinase [Yersinia mollaretii ATCC 43969], gi\|238797...	279.0	[0..1]	[193..1]
gi\|39939251 - gi\|39939251\|gb\|AAR32708.1\| thymidine kinase [Xenorhabdus nematophila]	278.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLYFYYSA MNAGKSTALL QSSYNYQERG MRTVVYTAEI DDRFGAGKVS SRIGLSSPAK  60
   61 LFNQNSSLFD EIRAEHEQQA IHCVLVDECQ FLTRQQVYEL SEVVDQLDIP VLCYGLRTDF 120
  121 RGELFIGSQY LLAWSDKLVE LKTICFCGRK ASMVLRLDQA GRPYNEGEQV VIGGNERYVS 180
  181 VCRKHYKEAL QVGSLTAIQE RHRHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2ja1A
Description:	No description for 2ja1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits