YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238902073, gi...
Organism:	Escherichia coli BW2952
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238902073, gi....

Description	E-value	Query Range	Subject Range
gi\|153839183, gi... - gi\|153839183\|ref\|ZP_01991850.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|... gi\|28807626, gi\|... - gi\|28899390\|ref\|NP_798995.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633], gi\|28807626\|dbj\|BAC60879.1... gi\|28807626 - gi\|28807626\|dbj\|BAC60879.1\| FkuA [Vibrio parahaemolyticus RIMD 2210633]	240.0	[0..1]	[234..1]
Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1 Y112_PASMU - UPF0001 protein PM0112 OS=Pasteurella multocida (strain Pm70) GN=PM0112 PE=3 SV=1	236.0	[0..2]	[233..1]
gi\|91228687, gi\|... - gi\|91228687\|ref\|ZP_01262601.1\| FkuA [Vibrio alginolyticus 12G01], gi\|91187758\|gb\|EAS74076.1\| FkuA [V...	236.0	[0..1]	[232..1]
YPI1_VIBAL - UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1	235.0	[0..1]	[232..1]
gi\|194538704, gi... - gi\|75855123\|ref\|ZP_00762784.1\| COG0325: Predicted enzyme with a TIM-barrel fold [Vibrio sp. Ex25], g...	233.0	[0..1]	[232..1]
gi\|59711037, gi\|... - gi\|59711037\|ref\|YP_203813.1\| hypothetical protein VF_0430 [Vibrio fischeri ES114], gi\|59479138\|gb\|AA...	233.0	[0..1]	[234..1]
gi\|82404395, gi\|... - gi\|82497569\|ref\|ZP_00883101.1\| Protein of unknown function UPF0001 [Shewanella sp. MR-4], gi\|8240439...	231.0	[0..1]	[234..1]
gi\|78503838, gi\|... - gi\|78688420\|ref\|ZP_00853110.1\| Protein of unknown function UPF0001 [Shewanella sp. ANA-3], gi\|785038...	229.0	[0..1]	[232..1]
gi\|85835892, gi\|... - gi\|86146413\|ref\|ZP_01064737.1\| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222], gi\|85835...	228.0	[0..1]	[233..1]
gi\|78508544, gi\|... - gi\|78692054\|ref\|ZP_00856630.1\| Protein of unknown function UPF0001 [Shewanella sp. MR-7], gi\|7850854...	228.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDIAHNLAQ VRDKISAAAT RCGRSPEEIT LLAVSKTKPA SAIAEAIDAG QRQFGENYVQ  60
   61 EGVDKIRHFQ ELGVTGLEWH FIGPLQSNKS RLVAEHFDWC HTIDRLRIAT RLNDQRPAEL 120
  121 PPLNVLIQIN ISDENSKSGI QLAELDELAA AVAELPRLRL RGLMAIPAPE SEYVRQFEVA 180
  181 RQMAVAFAGL KTRYPHIDTL SLGMSDDMEA AIAAGSTMVR IGTAIFGARD YSKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.09691
Match:	1w8gA
Description:	No description for 1w8gA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits