YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253974681, gi...
Organism:	Escherichia coli B str. REL606
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253974681, gi....

Description	E-value	Query Range	Subject Range
gi\|24985994, gi\|... - gi\|26990969\|ref\|NP_746394.1\| xanthine dehydrogenase, XdhA subunit [Pseudomonas putida KT2440], gi\|24...	303.0	[0..10]	[282..202]
gi\|148546828, gi... - gi\|82739348\|ref\|ZP_00902154.1\| xanthine dehydrogenase, XdhA subunit [Pseudomonas putida F1], gi\|8271... tr\|I7C0K4\|I7C0K4... - Xanthine dehydrogenase, small subunit OS=Pseudomonas putida (strain DOT-T1E) GN=hxA PE=4 SV=1	302.0	[0..10]	[282..202]
tr\|Q87YY2\|Q87YY2... - Xanthine dehydrogenase, N-terminal subunit OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSP... gi\|28854064, gi\|... - gi\|28870815\|ref\|NP_793434.1\| xanthine dehydrogenase, N-terminal subunit [Pseudomonas syringae pv. to... gi\|213926199, gi... - gi\|213968900\|ref\|ZP_03397040.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],...	300.0	[0..10]	[287..202]
gi\|24053277, gi\|... - gi\|24114138\|ref\|NP_708648.1\| xanthine dehydrogenase subunit XdhB [Shigella flexneri 2a str. 301], gi...	298.0	[0..1]	[292..1]
gi\|63255766, gi\|... - gi\|66045059\|ref\|YP_234900.1\| ferredoxin:molybdopterin dehydrogenase, FAD-binding:[2Fe-2S]-binding:CO...	297.0	[0..8]	[287..200]
gi\|254594219, gi... - gi\|254794819\|ref\|YP_003079656.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:... gi\|217327085, gi... - gi\|217327085\|ref\|ZP_03443168.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H... gi\|208734159, gi... - gi\|208812882\|ref\|ZP_03254211.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H... gi\|208808813, gi... - gi\|208808813\|ref\|ZP_03251150.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H... gi\|209159106, gi... - gi\|209397706\|ref\|YP_002272342.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:... gi\|208740235, gi... - gi\|208820112\|ref\|ZP_03260432.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H... gi\|209760804, gi... - pir\|\|D91096 probable dehydrogenase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|189374051, gi... - gi\|189374051\|gb\|EDU92467.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|168778879, gi... - gi\|189003511\|gb\|EDU72497.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|195936484 - gi\|195936484\|ref\|ZP_03081866.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli O157:H7 str. E... gi\|168799999, gi... - gi\|189377629\|gb\|EDU96045.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|189369378, gi... - gi\|189369378\|gb\|EDU87794.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|189358521, gi... - gi\|189358521\|gb\|EDU76940.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|187768814, gi... - gi\|187768814\|gb\|EDU32658.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... XDHB_ECO57 - Xanthine dehydrogenase FAD-binding subunit OS=Escherichia coli O157:H7 GN=xdhB PE=3 SV=1 gi\|168766859, gi... - gi\|189363892\|gb\|EDU82311.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|188017960, gi... - gi\|188017960\|gb\|EDU56082.1\| xanthine dehydrogenase, FAD-binding subunit [Escherichia coli O157:H7 st... gi\|13363212, gi\|... - gi\|15832994\|ref\|NP_311767.1\| xanthine dehydrogenase subunit XdhB [Escherichia coli O157:H7 str. Saka...	297.0	[0..1]	[292..1]
gi\|30042453, gi\|... - gi\|30064196\|ref\|NP_838367.1\| xanthine dehydrogenase subunit XdhB [Shigella flexneri 2a str. 2457T], ...	297.0	[0..1]	[292..1]
gi\|68387555 - gi\|68387555\|ref\|XP_688983.1\| PREDICTED: similar to xanthine dehydrogenase [Danio rerio]	297.0	[0..3]	[292..248]
gi\|15803404, gi\|... - gi\|15803404\|ref\|NP_289437.1\| putative dehydrogenase [Escherichia coli O157:H7 EDL933], gi\|12517385\|g... gi\|25316595 - gi\|25316595\|pir\|\|H85941 probable dehydrogenase ygeT [imported] - Escherichia coli (strain O157:H7, ...	295.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDFASYHRA ATLADAINLL ADNPQAKLLA GGTDVLIQLH HHNDRYRHIV DIHNLAELRG  60
   61 ITLAEDGSLR IGSATTFTQL IEDPITQRHL PALCAAATSI AGPQIRNVAT YGGNICNGAT 120
  121 SADSATPTLI YDAKLEIHSP RGVRFVPING FHTGPGKVSL EHDEILVAFH FPPQPKEHAG 180
  181 SAHFKYAMRD AMDISTIGCA AHCRLDNGNF SELRLAFGVA APTPIRCQHA EQTAQNAPLN 240
  241 LQTLEAISES VLQDVAPRSS WRASKEFRLH LIQTMTKKVI SEAVAAAGGK LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	1ffvC
Description:	Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain; Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.21136912606491	bayes_pls_golite062009
oxidoreductase activity	0.296063918808454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: