YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229894980, gi...
Organism:	Yersinia pestis Pestoides A
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229894980, gi....

Description	E-value	Query Range	Subject Range
gi\|188015255, gi... - gi\|188015255\|gb\|EDU53377.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|189355541, gi... - gi\|189355541\|gb\|EDU73960.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168763698, gi... - gi\|189366180\|gb\|EDU84596.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168771141, gi... - gi\|189360031\|gb\|EDU78450.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|187768709, gi... - gi\|187768709\|gb\|EDU32553.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168783422, gi... - gi\|188999230\|gb\|EDU68216.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC4... gi\|168789436, gi... - gi\|189370972\|gb\|EDU89388.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC8... gi\|209912173, gi... - gi\|209918914\|ref\|YP_002292998.1\| pyridine nucleotide transhydrogenase [Escherichia coli SE11], gi\|20... gi\|217318050, gi... - gi\|217328703\|ref\|ZP_03444784.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|218360937, gi... - gi\|218554169\|ref\|YP_002387082.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI1], gi\|21... gi\|218558472, gi... - gi\|218558472\|ref\|YP_002391385.1\| pyridine nucleotide transhydrogenase [Escherichia coli S88], gi\|218... gi\|218351896, gi... - gi\|218695164\|ref\|YP_002402831.1\| pyridine nucleotide transhydrogenase [Escherichia coli 55989], gi\|2... gi\|218369818, gi... - gi\|218699832\|ref\|YP_002407461.1\| pyridine nucleotide transhydrogenase [Escherichia coli IAI39], gi\|2... gi\|218705102, gi... - gi\|218705102\|ref\|YP_002412621.1\| pyridine nucleotide transhydrogenase [Escherichia coli UMN026], gi\|... gi\|168800859, gi... - gi\|189376895\|gb\|EDU95311.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str. EC5... gi\|169754973, gi... - gi\|170020045\|ref\|YP_001724999.1\| pyridine nucleotide transhydrogenase [Escherichia coli ATCC 8739], ... gi\|169889101, gi... - gi\|170081266\|ref\|YP_001730586.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|195938992 - gi\|195938992\|ref\|ZP_03084374.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. ... gi\|208725163, gi... - gi\|208810647\|ref\|ZP_03252523.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208816653, gi... - gi\|208816653\|ref\|ZP_03257773.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|208819628, gi... - gi\|208819628\|ref\|ZP_03259948.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str.... gi\|209158336, gi... - gi\|209396936\|ref\|YP_002270674.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli O157:H7 str... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... PNTB_SHIFL - NAD(P) transhydrogenase subunit beta OS=Shigella flexneri GN=pntB PE=3 SV=1 gi\|24112989, gi\|... - gi\|24112989\|ref\|NP_707499.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 301], g... PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... gi\|30041365, gi\|... - gi\|30063116\|ref\|NP_837287.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 2a str. 2457T],... PNTB_ECOLI - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Pyridine nucleotide transhydrogenase subunit beta... PNTB_ECO57 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O157:H7 GN=pntB PE=3 SV=1 PNTB_ECOL6 - NAD(P) transhydrogenase subunit beta OS=Escherichia coli O6 GN=pntB PE=3 SV=1 gi\|254592619, gi... - gi\|254793219\|ref\|YP_003078056.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|253973564, gi... - gi\|254161663\|ref\|YP_003044771.1\| pyridine nucleotide transhydrogenase [Escherichia coli B str. REL60... gi\|13361775, gi\|... - gi\|15831562\|ref\|NP_310335.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 str. Sak... gi\|253977759, gi... - gi\|254288452\|ref\|YP_003054200.1\| pyridine nucleotide transhydrogenase [Escherichia coli BL21(DE3)], ... gi\|110615123, gi... - gi\|110805575\|ref\|YP_689095.1\| pyridine nucleotide transhydrogenase [Shigella flexneri 5 str. 8401], ... gi\|251785060, gi... - gi\|251785060\|ref\|YP_002999364.1\| hypothetical protein B21_01561 [Escherichia coli BL21], gi\|24237733... gi\|238900818, gi... - gi\|238900818\|ref\|YP_002926614.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia col... gi\|237705542, gi... - gi\|237705542\|ref\|ZP_04536023.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227886040, gi... - gi\|227886040\|ref\|ZP_04003845.1\| pyridine nucleotide transhydrogenase [Escherichia coli 83972], gi\|22... gi\|1742636, gi\|8... - gi\|89108443\|ref\|AP_002223.1\| pyridine nucleotide transhydrogenase, beta subunit [Escherichia coli st... gi\|91210813, gi\|... - gi\|91210813\|ref\|YP_540799.1\| pyridine nucleotide transhydrogenase [Escherichia coli UTI89], gi\|91072... EG10745 - pyridine nucleotide transhydrogenase, beta subunit / Proton-translocating NAD(P) transhydrogenase, b... gi\|15802016, gi\|... - gi\|15802016\|ref\|NP_288037.1\| pyridine nucleotide transhydrogenase [Escherichia coli O157:H7 EDL933],... gi\|117623788, gi... - gi\|117623788\|ref\|YP_852701.1\| pyridine nucleotide transhydrogenase [Escherichia coli APEC O1], gi\|11... gi\|124529243, gi... - gi\|124529243\|ref\|ZP_01700318.1\| NAD(P) transhydrogenase, beta subunit [Escherichia coli B], gi\|12450... gi\|82776829, gi\|... - gi\|82776829\|ref\|YP_403178.1\| pyridine nucleotide transhydrogenase [Shigella dysenteriae Sd197], gi\|8... gi\|75512965, gi\|... - gi\|75512965\|ref\|ZP_00735446.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 536... gi\|74312073, gi\|... - gi\|74312073\|ref\|YP_310492.1\| pyridine nucleotide transhydrogenase [Shigella sonnei Ss046], gi\|738555... gi\|194436470, gi... - gi\|83587937\|ref\|ZP_00926563.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli 101... gi\|187731810, gi... - gi\|75178503\|ref\|ZP_00698549.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella boydii BS51... gi\|194419839, gi... - gi\|83570992\|ref\|ZP_00922434.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Shigella dysenteriae... gi\|75212939, gi\|... - gi\|75212939\|ref\|ZP_00712937.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B17... gi\|192927426, gi... - gi\|75257021\|ref\|ZP_00728581.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E22... gi\|157155678, gi... - gi\|75190642\|ref\|ZP_00703909.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E24... gi\|75195682, gi\|... - gi\|75195682\|ref\|ZP_00705752.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli HS]...	0.0	[1..462]	[1..462]
gi\|218689548, gi... - gi\|218689548\|ref\|YP_002397760.1\| pyridine nucleotide transhydrogenase [Escherichia coli ED1a], gi\|21... gi\|110641724, gi... - gi\|110641724\|ref\|YP_669454.1\| pyridine nucleotide transhydrogenase [Escherichia coli 536], gi\|110343... gi\|191174334, gi... - gi\|75236687\|ref\|ZP_00720766.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli F11... gi\|215264850, gi... - gi\|215486778\|ref\|YP_002329209.1\| pyridine nucleotide transhydrogenase [Escherichia coli O127:H6 str....	0.0	[1..462]	[1..462]
gi\|82544031, gi\|... - gi\|82544031\|ref\|YP_407978.1\| pyridine nucleotide transhydrogenase [Shigella boydii Sb227], gi\|812454...	0.0	[1..462]	[1..462]
gi\|37526084, gi\|... - gi\|37526084\|ref\|NP_929428.1\| pyridine nucleotide transhydrogenase [Photorhabdus luminescens subsp. l...	0.0	[1..462]	[1..462]
gi\|192956443, gi... - gi\|75234915\|ref\|ZP_00719194.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli E11...	0.0	[1..462]	[1..462]
gi\|190904067, gi... - gi\|75230949\|ref\|ZP_00717398.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Escherichia coli B7A...	0.0	[1..462]	[1..462]
gi\|102621429 - gi\|102621429\|gb\|ABF71059.1\| NADP transhydrogenase beta subunit [Enterobacter cloacae]	0.0	[1..462]	[1..462]
gi\|29141853, gi\|... - gi\|29141853\|ref\|NP_805195.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|56127812, gi\|... - gi\|56413555\|ref\|YP_150630.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16760383 - gi\|16760383\|ref\|NP_456000.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri... gi\|16502678, gi\|... - gi\|25284880\|pir\|\|AI0682 NAD(P) transhydrogenase (B-specific) (EC 1.6.1.1) - Salmonella enterica subs... gi\|16419999, gi\|... - gi\|16764825\|ref\|NP_460440.1\| pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2], gi\|1... gi\|238911712 - gi\|238911712\|ref\|ZP_04655549.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|168229859, gi... - gi\|205335518\|gb\|EDZ22282.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205327685, gi... - gi\|205327685\|gb\|EDZ14449.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|167551545, gi... - gi\|205323549\|gb\|EDZ11388.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|161614096, gi... - gi\|161614096\|ref\|YP_001588061.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|195634188, gi... - gi\|195634188\|gb\|EDX52540.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168260356, gi... - gi\|205350940\|gb\|EDZ37571.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|205339540, gi... - gi\|205339540\|gb\|EDZ26304.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|168235559, gi... - gi\|197291149\|gb\|EDY30502.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=pntB] [protein=pyridine nucleotide transhydrogenase] [protein_id=YP_005237357.1] [location=156... gi\|161503424, gi... - gi\|161503424\|ref\|YP_001570536.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ar... gi\|213609351 - gi\|213609351\|ref\|ZP_03369177.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|213424137 - gi\|213424137\|ref\|ZP_03357019.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|205352810, gi... - gi\|205352810\|ref\|YP_002226611.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|204927632, gi... - gi\|204927632\|ref\|ZP_03218833.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|224468540, gi... - gi\|224584013\|ref\|YP_002637811.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|213999332 - gi\|213999332\|ref\|ZP_03410067.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. ent... gi\|194457033, gi... - gi\|194470669\|ref\|ZP_03076653.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|194408065, gi... - gi\|194449761\|ref\|YP_002045516.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. en... gi\|194444194, gi... - gi\|194444194\|ref\|YP_002040727.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|205343863, gi... - gi\|205343863\|gb\|EDZ30627.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. enteri... gi\|199602297, gi... - gi\|200389852\|ref\|ZP_03216463.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197241783, gi... - gi\|197263528\|ref\|ZP_03163602.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. en... gi\|197251418, gi... - gi\|197251418\|ref\|YP_002146565.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e... gi\|194710685, gi... - gi\|194735183\|ref\|YP_002114494.1\| NAD(P) transhydrogenase, beta subunit [Salmonella enterica subsp. e...	0.0	[1..462]	[1..462]
gi\|62127701, gi\|... - gi\|62180068\|ref\|YP_216485.1\| pyridine nucleotide transhydrogenase [Salmonella enterica subsp. enteri...	0.0	[1..462]	[1..462]
gi\|77975378 - gi\|77975378\|ref\|ZP_00830914.1\| COG1282: NAD/NADP transhydrogenase beta subunit [Yersinia frederiksen...	0.0	[1..462]	[1..463]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGLVTAAY IVAAILFIFS LAGLSRHETS RQGNSFGVAG MAIALIATIL GPDSSNVAWI  60
   61 IIAMVIGGAI GIYLAKKVEM TEMPELVAIL HSFVGLAAVL VGFNSYLDHG SMMDAVMENI 120
  121 HLTEVFLGIF IGAVTFTGSI VAFGKLRGVI SSKPLMLPQR HKLNLVALVV SFLLMVTFVR 180
  181 TESITLQVVA L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [192-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLMTLIALGF GWHLVASIGG ADMPVVVSML NSYSGWAAAA AGFMLSNDLL IVTGALVGSS  60
   61 GAILSYIMCK AMNRSFISVI AGGFGTDGSS TGNAEEM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEYREATAED VAEQLRNASS VIITPGYGMA VAQAQYPVAE ITAKLQARGI KVRFGIHPVA  60
   61 GRLPGHMNVL LAEAKVPYDV VLEMDEINDD FSSTDVVLVI GANDTVNPAA LEDPRSPIAG 120
  121 MPVLEVWKAH SVIAFKRSMN TGYAGVQNPL FFKENTQMLF GDAKDSVEAI LRALNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.045757
Match:	2bruC
Description:	No description for 2bruC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits