YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229895094, gi...
Organism:	Yersinia pestis Pestoides A
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229895094, gi....

Description	E-value	Query Range	Subject Range
gi\|238796344, gi... - gi\|77962204\|ref\|ZP_00826027.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia moll...	0.0	[1..273]	[1..273]
gi\|82737938, gi\|... - gi\|82737938\|ref\|ZP_00900780.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714943\|g...	0.0	[1..271]	[46..315]
gi\|168756703, gi... - gi\|189356148\|gb\|EDU74567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188014133, gi... - gi\|188014133\|gb\|EDU52255.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189360653, gi... - gi\|189360653\|gb\|EDU79072.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168762234, gi... - gi\|189367489\|gb\|EDU85905.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|24051846, gi\|... - gi\|24112900\|ref\|NP_707410.1\| hypothetical protein SF1527 [Shigella flexneri 2a str. 301], gi\|2405184... PSRP_SHIFL - Phosphoenolpyruvate synthase regulatory protein OS=Shigella flexneri GN=ppsR PE=3 SV=1 gi\|30041279, gi\|... - gi\|30063030\|ref\|NP_837201.1\| hypothetical protein S1645 [Shigella flexneri 2a str. 2457T], gi\|300412... PSRP_ECOL6 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... EG11132 - PEP synthase kinase and PEP synthase pyrophosphorylase / PEP synthase regulatory protein PSRP; bifun... PSRP_ECO57 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O157:H7 GN=ppsR PE=3 SV=1 gi\|192927117, gi... - gi\|75256661\|ref\|ZP_00728278.1\| COG1806: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|85675084, gi\|... - gi\|89108543\|ref\|AP_002323.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... PSRP_ECO24 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... PSRP_ECOHS - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O9:H4 (strain HS) GN=ppsR PE=3 S... PSRP_ECOK1 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O1:K1 / APEC GN=ppsR PE=3 SV=1 PSRP_SHIDS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella dysenteriae serotype 1 (strain Sd197) GN... gi\|124498951, gi... - gi\|124530848\|ref\|ZP_01701353.1\| protein of unknown function DUF299 [Escherichia coli B], gi\|12449895... PSRP_SHISS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella sonnei (strain Ss046) GN=ppsR PE=3 SV=1 YDIA_ECOL6 - Putative phosphotransferase ydiA OS=Escherichia coli O6 GN=ydiA PE=3 SV=1 YDIA_ECOLI - UPF0085 protein ydiA - Escherichia coli gi\|15802115, gi\|... - gi\|15802115\|ref\|NP_288137.1\| hypothetical protein Z2732 [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|194416965, gi... - gi\|194434796\|ref\|ZP_03067046.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194429483, gi... - gi\|194429483\|ref\|ZP_03062005.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412447... sp\|B7US42\|YDIA_ECO27 - Putative phosphotransferase ydiA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ydiA PE=3 S... gi\|195937387 - gi\|195937387\|ref\|ZP_03082769.1\| hypothetical protein EscherichcoliO157_13217 [Escherichia coli O157:... PSRP_ECOUT - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain UTI89 / UPEC) GN=ppsR PE... gi\|194438566, gi... - gi\|194438566\|ref\|ZP_03070655.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442257... gi\|208730976, gi... - gi\|208816633\|ref\|ZP_03257753.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208810608, gi... - gi\|208810608\|ref\|ZP_03252484.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... PSRP_ECO5E - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208741402, gi... - gi\|208821279\|ref\|ZP_03261599.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|189000313, gi... - gi\|189000313\|gb\|EDU69299.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187769483, gi... - gi\|187769483\|gb\|EDU33327.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... EG11132 - PEP synthase kinase and PEP synthase pyrophosphorylase / PEP synthase regulatory protein PSRP; bifun... PSRP_ECOLC - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|189377604, gi... - gi\|189377604\|gb\|EDU96020.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168789839, gi... - gi\|189370577\|gb\|EDU88993.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|13361877, gi\|... - gi\|15831664\|ref\|NP_310437.1\| hypothetical protein ECs2410 [Escherichia coli O157:H7 str. Sakai], gi\|... PSRP_ECOSM - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ppsR... PSRP_SHIF8 - Phosphoenolpyruvate synthase regulatory protein OS=Shigella flexneri serotype 5b (strain 8401) GN=pp... PSRP_ECODH - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain K12 / DH10B) GN=ppsR PE=... gi\|192957790, gi... - gi\|193068995\|ref\|ZP_03049954.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|188491583, gi... - gi\|188496384\|ref\|ZP_03003654.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849158... PSRP_ECO27 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... gi\|227885875, gi... - gi\|227885875\|ref\|ZP_04003680.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783744... PSRP_ECOSE - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain SE11) GN=ppsR PE=3 SV=1 gi\|237705651, gi... - gi\|237705651\|ref\|ZP_04536132.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... PSRP_ECO8A - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O8 (strain IAI1) GN=ppsR PE=3 SV... PSRP_ECOBW - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|217328785, gi... - gi\|217328785\|ref\|ZP_03444866.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|242377427, gi... - gi\|251785154\|ref\|YP_002999458.1\| hypothetical protein B21_01661 [Escherichia coli BL21], gi\|24237742... PSRP_ECO81 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O81 (strain ED1a) GN=ppsR PE=3 S... gi\|253977858, gi... - gi\|254288551\|ref\|YP_003054299.1\| hypothetical protein ECD_01672 [Escherichia coli BL21(DE3)], gi\|253... PSRP_ECO45 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=p... gi\|253973664, gi... - gi\|254161763\|ref\|YP_003044871.1\| hypothetical protein ECB_01672 [Escherichia coli B str. REL606], gi... gi\|254793320, gi... - gi\|254793320\|ref\|YP_003078157.1\| hypothetical protein ECSP_2270 [Escherichia coli O157:H7 str. TW143... PSRP_ECO55 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli (strain 55989 / EAEC) GN=ppsR PE...	0.0	[1..273]	[5..277]
PSRP_ECOL5 - Phosphoenolpyruvate synthase regulatory protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... gi\|191171707, gi... - gi\|191171707\|ref\|ZP_03033254.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908037\|...	0.0	[1..273]	[5..277]
PSRP_SHIB3 - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... PSRP_SHIBS - Phosphoenolpyruvate synthase regulatory protein OS=Shigella boydii serotype 4 (strain Sb227) GN=ppsR...	0.0	[1..273]	[5..277]
PSRP_PECAS - Putative phosphoenolpyruvate synthase regulatory protein OS=Pectobacterium atrosepticum (strain SCRI... Y1852_ERWCT - Putative phosphotransferase ECA1852 OS=Erwinia carotovora subsp. atroseptica GN=ECA1852 PE=3 SV=1	0.0	[1..273]	[1..273]
YM91_PSESM, Y229... - (Q883Q9) Hypothetical UPF0085 protein PSPTO2291, Putative phosphotransferase PSPTO_2291 OS=Pseudomon... PSRP_PSESM - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas syringae pv. tomato (strain ... gi\|213927074, gi... - gi\|213968094\|ref\|ZP_03396239.1\| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1],...	0.0	[1..271]	[1..270]
PSRP_PSEPF - Putative phosphoenolpyruvate synthase regulatory protein OS=Pseudomonas fluorescens (strain Pf0-1) G...	0.0	[1..271]	[1..270]
gi\|238782556, gi... - gi\|77959213\|ref\|ZP_00823235.1\| COG1806: Uncharacterized protein conserved in bacteria [Yersinia berc...	0.0	[6..273]	[2..269]
gi\|197263426, gi... - gi\|197263426\|ref\|ZP_03163500.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... PSRP_SALA4 - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella agona (strain SL483) GN=ppsR PE=3 SV=1 PSRP_SALDC - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella dublin (strain CT_02021853) GN=ppsR PE... PSRP_SALPK - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi A (strain AKU_12601) GN=ppsR... gi\|29137321, gi\|... - gi\|29141693\|ref\|NP_805035.1\| hypothetical protein t1229 [Salmonella enterica subsp. enterica serovar... PSRP_SALHS - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella heidelberg (strain SL476) GN=ppsR PE=3... gi\|16760546 - gi\|16760546\|ref\|NP_456163.1\| hypothetical protein STY1762 [Salmonella enterica subsp. enterica serov... PSRP_SALNS - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella newport (strain SL254) GN=ppsR PE=3 SV... PSRP_SALTI - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella typhi GN=ppsR PE=3 SV=1 PSRP_SALSV - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella schwarzengrund (strain CVM19633) GN=pp... PSRP_SALTY - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|194454911, gi... - gi\|194468547\|ref\|ZP_03074531.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|168263829, gi... - gi\|205347576\|gb\|EDZ34207.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTY - Putative phosphotransferase ydiA OS=Salmonella typhimurium GN=ydiA PE=3 SV=1 gi\|168240853, gi... - gi\|205339432\|gb\|EDZ26196.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238910836 - gi\|238910836\|ref\|ZP_04654673.1\| hypothetical protein SentesTe_06832 [Salmonella enterica subsp. ente... YDIA_SALCH - Putative phosphotransferase ydiA OS=Salmonella choleraesuis GN=ydiA PE=3 SV=1 gi\|205341325, gi... - gi\|205341325\|gb\|EDZ28089.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|195634187, gi... - gi\|195634187\|gb\|EDX52539.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327733, gi... - gi\|205327733\|gb\|EDZ14497.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALCH - Putative phosphotransferase ydiA OS=Salmonella choleraesuis GN=ydiA PE=3 SV=1 gi\|205323523, gi... - gi\|205323523\|gb\|EDZ11362.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTY - Putative phosphotransferase ydiA OS=Salmonella typhimurium GN=ydiA PE=3 SV=1 YDIA_SALPA - Putative phosphotransferase ydiA OS=Salmonella paratyphi A GN=ydiA PE=3 SV=1 gi\|197287778, gi... - gi\|197287778\|gb\|EDY27168.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YDIA_SALTI - Putative phosphotransferase ydiA OS=Salmonella typhi GN=ydiA PE=3 SV=1 gi\|168233534, gi... - gi\|205332345\|gb\|EDZ19109.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... PSRP_SALPC - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi C (strain RKS4594) GN=ppsR P... gi\|213646717 - gi\|213646717\|ref\|ZP_03376770.1\| hypothetical protein SentesTy_04990 [Salmonella enterica subsp. ente... gi\|213615820 - gi\|213615820\|ref\|ZP_03371646.1\| hypothetical protein SentesTyp_15634 [Salmonella enterica subsp. ent... gi\|214001043 - gi\|214001043\|ref\|ZP_03411778.1\| hypothetical protein Salmonellentericaenterica_11095 [Salmonella ent... gi\|213974752 - gi\|213974752\|ref\|ZP_03402011.1\| hypothetical protein Salmonellaentericaenterica_09233 [Salmonella en... PSRP_SALEP - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella enteritidis PT4 (strain P125109) GN=pp... PSRP_SALPB - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... gi\|204927746, gi... - gi\|204927746\|ref\|ZP_03218947.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|213581766 - gi\|213581766\|ref\|ZP_03363592.1\| hypothetical protein SentesTyph_11409 [Salmonella enterica subsp. en... gi\|213428581 - gi\|213428581\|ref\|ZP_03361331.1\| hypothetical protein SentesTyphi_25476 [Salmonella enterica subsp. e... PSRP_SALCH - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella choleraesuis (strain SC-B67) GN=ppsR P... PSRP_SALPA - Phosphoenolpyruvate synthase regulatory protein OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... YDIA_SALPB - Putative phosphotransferase ydiA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ydiA PE=... lcl\|NC_016856.1_... - [gene=ydiA] [protein=hypothetical protein] [protein_id=YP_005237212.1] [location=complement(1436576....	0.0	[1..273]	[5..277]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERCVFYISD GTAITAEVLG HAVLSQFPIN VTTFTLPFVE NAARAQSVCK QINEIYQDTG  60
   61 VRPLVFYSII SLEVREIIQR SEGFCQDIVQ ALVAPLQGEL GVPPQPVLNR THGLTESNLD 120
  121 KYDARIAAID YALA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.200659
Match:	PF03618.5
Description:	No description for PF03618.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.812	0.424	ATP binding	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.904	0.000	ATP binding	c.78.2	Aspartate/glutamate racemase
View	Download	0.833	0.000	ATP binding	c.54.1	IIA domain of mannose transporter, IIA-Man
View	Download	0.833	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.826	N/A	N/A	c.78.2	Aspartate/glutamate racemase

Predicted Domain #2

Region A:
Residues: [135-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDDGISLRNL DQAQVILLGV SRCGKTPTSL YLAMQFGIRA ANYPFIADDM DNLQLPAALK  60
   61 PFQHKLFGLT INPERLAAIR EERRENSRYA SLRQCRMEVG EVEALFRKNQ IRYLNSTNYS 120
  121 VEEISTKILD ILGMSRRMF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.301700930786307	bayes_pls_golite062009
catalytic activity	0.176212702885001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: