YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238705348, gi...
Organism:	Yersinia ruckeri ATCC 29473
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238705348, gi....

Description	E-value	Query Range	Subject Range
gi\|238793007, gi... - gi\|77977595\|ref\|ZP_00833039.1\| COG0211: Ribosomal protein L27 [Yersinia intermedia ATCC 29909], gi\|2...	143.0	[0..1]	[85..1]
RL27_LEGPA - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Paris) GN=rpmA PE=3 SV=1 RL27_LEGPL - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Lens) GN=rpmA PE=3 SV=1 RL27_LEGPH - 50S ribosomal protein L27 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC... RL27_LEGPC - 50S ribosomal protein L27 OS=Legionella pneumophila (strain Corby) GN=rpmA PE=3 SV=1	143.0	[0..1]	[85..1]
gi\|238718564, gi... - gi\|77961854\|ref\|ZP_00825683.1\| COG0211: Ribosomal protein L27 [Yersinia mollaretii ATCC 43969], gi\|2...	143.0	[0..1]	[85..1]
gi\|238715585, gi... - gi\|77958776\|ref\|ZP_00822804.1\| COG0211: Ribosomal protein L27 [Yersinia bercovieri ATCC 43970], gi\|2...	142.0	[0..1]	[85..1]
gi\|227113760 - gi\|227113760\|ref\|ZP_03827416.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. brasili... RL27_ERWCT - 50S ribosomal protein L27 OS=Erwinia carotovora subsp. atroseptica GN=rpmA PE=3 SV=1 gi\|227328596 - gi\|227328596\|ref\|ZP_03832620.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. carotov... gi\|255057112, gi... - gi\|255057112\|ref\|ZP_05309299.1\| ribosomal protein L27 [Pectobacterium wasabiae WPP163], gi\|254987072... RL27_PECAS - 50S ribosomal protein L27 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpmA P...	142.0	[0..1]	[85..1]
gi\|62257455 - gi\|62257455\|gb\|AAX77717.1\| unknown protein [synthetic construct]	142.0	[0..1]	[82..27]
RL27_SODGM - 50S ribosomal protein L27 OS=Sodalis glossinidius (strain morsitans) GN=rpmA PE=3 SV=1	141.0	[0..1]	[85..1]
RL27_PHOLL - 50S ribosomal protein L27 OS=Photorhabdus luminescens subsp. laumondii GN=rpmA PE=3 SV=1 RL27_PHOLL - 50S ribosomal protein L27 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	140.0	[0..1]	[85..1]
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	140.0	[0..1]	[84..1]
RL27_VIBVY - 50S ribosomal protein L27 OS=Vibrio vulnificus (strain YJ016) GN=rpmA PE=3 SV=1 RL27_VIBVU - 50S ribosomal protein L27 OS=Vibrio vulnificus (strain CMCP6) GN=rpmA PE=3 SV=1 RL27_VIBVU - 50S ribosomal protein L27 OS=Vibrio vulnificus GN=rpmA PE=3 SV=1	140.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGST RNGRDSESKR LGVKRFGGEA VLAGSIIVRQ RGTKFHAGIN VGCGKDHTLF  60
   61 ALADGKVKFE VKGPKNRKFI SIEAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1vs6W
Description:	No description for 1vs6W was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits