YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|237707170, gi...
Organism:	Escherichia sp. 3_2_53FAA
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|237707170, gi....

Description	E-value	Query Range	Subject Range
gi\|37200483, gi\|... - gi\|37675943\|ref\|NP_936339.1\| hypothetical protein VVA0283 [Vibrio vulnificus YJ016], gi\|37200483\|dbj...	151.0	[0..1]	[106..16]
Y2666_ERWCT - UPF0145 protein ECA2666 OS=Erwinia carotovora subsp. atroseptica GN=ECA2666 PE=3 SV=1 Y2666_PECAS - UPF0145 protein ECA2666 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2666 ...	151.0	[0..1]	[107..1]
gi\|83945197, gi\|... - gi\|83945197\|ref\|ZP_00957546.1\| hypothetical protein OA2633_00480 [Oceanicaulis alexandrii HTCC2633],...	150.0	[0..1]	[105..1]
Y734_NITMU - UPF0145 protein Nmul_A0734 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A07...	149.0	[0..1]	[106..1]
gi\|85688249, gi\|... - gi\|85709539\|ref\|ZP_01040604.1\| hypothetical protein NAP1_11678 [Erythrobacter sp. NAP1], gi\|85688249...	148.0	[0..1]	[105..1]
tr\|A2PRH7\|A2PRH7... - UPF0145 protein DN30_169 OS=Vibrio cholerae GN=DN30_169 PE=3 SV=1, UPF0145 protein A51_C0935 OS=Vibr... gi\|229336657, gi... - gi\|229526499\|ref\|ZP_04415903.1\| hypothetical protein VCA_000627 [Vibrio cholerae bv. albensis VL426]... gi\|229514363, gi... - gi\|229514363\|ref\|ZP_04403824.1\| hypothetical protein VCB_002013 [Vibrio cholerae TMA 21], gi\|2293483... gi\|125622808, gi... - gi\|75821030\|ref\|ZP_00751066.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|153801413, gi... - gi\|153801413\|ref\|ZP_01955999.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123079...	147.0	[0..1]	[106..1]
gi\|91770104, gi\|... - gi\|91770104\|ref\|ZP_01271933.1\| Protein of unknown function DUF74 [Psychrobacter sp. PRwf-1], gi\|9172...	147.0	[0..2]	[104..4]
gi\|85375728, gi\|... - gi\|85375728\|ref\|YP_459790.1\| hypothetical protein ELI_14505 [Erythrobacter litoralis HTCC2594], gi\|8...	147.0	[0..1]	[105..1]
Y288_VIBC3 - UPF0145 protein VC0395_0288/VC395_A0976 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classica... gi\|254850116, gi... - gi\|75831382\|ref\|ZP_00760646.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae MO10], gi... gi\|75817064, gi\|... - gi\|75817064\|ref\|ZP_00747519.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae V52], gi\|... gi\|229352681, gi... - gi\|229510236\|ref\|ZP_04399716.1\| hypothetical protein VCE_001640 [Vibrio cholerae B33], gi\|229352681\|... tr\|D7HBJ5\|D7HBJ5... - UPF0145 protein VchoM_02263 OS=Vibrio cholerae MO10 GN=VchoM_02263 PE=3 SV=1, UPF0145 protein VCRC38... gi\|153818318, gi... - gi\|153818318\|ref\|ZP_01970985.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... Y3711_VIBCM - UPF0145 protein VCM66_A0911 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=VCM66_A0911 PE=3 SV=1 gi\|229345670, gi... - gi\|229517634\|ref\|ZP_04407079.1\| hypothetical protein VCC_001657 [Vibrio cholerae RC9], gi\|229345670\|... gi\|197753779, gi... - gi\|254284577\|ref\|ZP_04959544.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|229356261, gi... - gi\|229505910\|ref\|ZP_04395419.1\| hypothetical protein VCF_001120 [Vibrio cholerae BX 330286], gi\|2293... gi\|149741658, gi... - gi\|153824702\|ref\|ZP_01977369.1\| conserved protein [Vibrio cholerae MZO-2], gi\|149741658\|gb\|EDM55687.... gi\|229371928, gi... - gi\|229605442\|ref\|YP_002876146.1\| hypothetical protein VCD_000384 [Vibrio cholerae MJ-1236], gi\|22937... gi\|229528150, gi... - gi\|229528150\|ref\|ZP_04417541.1\| hypothetical protein VCG_001230 [Vibrio cholerae 12129(1)], gi\|22933...	146.0	[0..1]	[106..1]
YBG4_VIBVU - UPF0145 protein VV2_1464 OS=Vibrio vulnificus (strain CMCP6) GN=VV2_1464 PE=3 SV=1 Y4283_VIBVY - UPF0145 protein VVA0283 OS=Vibrio vulnificus (strain YJ016) GN=VVA0283 PE=3 SV=2 YBG4_VIBVU - UPF0145 protein VV2_1464 OS=Vibrio vulnificus GN=VV2_1464 PE=3 SV=1	146.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSTTPTLE GQTIVEYCGV VTGEAILGAN IFRDFFAGIR DIVGGRSGAY EKELRKAREI  60
   61 AFEELGSQAR ALGADAVVGI DIDYETVGQN GSMLMVSVSG TAVKTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1y2iA
Description:	Crystal Structure of MCSG Target APC27401 from Shigella flexneri
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits