YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|242378182, gi...
Organism:	Escherichia coli BL21
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|242378182, gi....

Description	E-value	Query Range	Subject Range
gi\|81246448, gi\|... - gi\|82545037\|ref\|YP_408984.1\| thioredoxin 2 [Shigella boydii Sb227], gi\|81246448\|gb\|ABB67156.1\| putat...	187.0	[0..1]	[139..1]
gi\|194710494, gi... - gi\|194734992\|ref\|YP_002115661.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar S... gi\|197211460, gi... - gi\|197247757\|ref\|YP_002147553.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar A... gi\|194449202, gi... - gi\|194449202\|ref\|YP_002046658.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|194456948, gi... - gi\|194470584\|ref\|ZP_03076568.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Ke... gi\|16765969, gi\|... - gi\|16765969\|ref\|NP_461584.1\| thioredoxin 2 [Salmonella typhimurium LT2], gi\|16421199\|gb\|AAL21543.1\| ... gi\|205340545, gi... - gi\|205340545\|gb\|EDZ27309.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Weltev... gi\|238912714 - gi\|238912714\|ref\|ZP_04656551.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Tennessee... gi\|194405008, gi... - gi\|194446345\|ref\|YP_002041916.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar N... gi\|168262181, gi... - gi\|205349283\|gb\|EDZ35914.1\| thioredoxin [Salmonella enterica subsp. enterica serovar Hadar str. RI_0... gi\|195628856, gi... - gi\|195628856\|gb\|EDX48270.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Newpor... gi\|197288811, gi... - gi\|197288811\|gb\|EDY28184.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Schwar... gi\|168245087, gi... - gi\|205336127\|gb\|EDZ22891.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Heidel... gi\|205327358, gi... - gi\|205327358\|gb\|EDZ14122.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|205333585, gi... - gi\|205333585\|gb\|EDZ20349.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Kentuc... gi\|161361995, gi... - gi\|161612631\|ref\|YP_001586596.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Paratyph... gi\|167553663, gi... - gi\|205321936\|gb\|EDZ09775.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Saintp... gi\|204929715, gi... - gi\|204929715\|ref\|ZP_03220789.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Ja... gi\|224469031, gi... - gi\|224584504\|ref\|YP_002638302.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Paratyph... gi\|198242015, gi... - gi\|198242015\|ref\|YP_002216664.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar D... gi\|199605943, gi... - gi\|200388845\|ref\|ZP_03215457.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Vi... gi\|197242875, gi... - gi\|197264620\|ref\|ZP_03164694.1\| putative thioredoxin [Salmonella enterica subsp. enterica serovar Sa... gi\|197361463, gi... - gi\|197361463\|ref\|YP_002141099.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Paratyph... lcl\|NC_016856.1_... - [gene=trxC] [protein=thioredoxin 2] [protein_id=YP_005238771.1] [location=2842488..2842907] gi\|62128857, gi\|... - gi\|62181224\|ref\|YP_217641.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Choleraesuis... gi\|56126785, gi\|... - gi\|56412528\|ref\|YP_149603.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Paratyphi A ...	185.0	[0..1]	[139..1]
gi\|57282285 - gi\|57282285\|emb\|CAD32527.1\| putative thioredoxin [uncultured bacterium]	183.0	[0..1]	[139..25]
gi\|91775514, gi\|... - gi\|91775514\|ref\|YP_545270.1\| thioredoxin [Methylobacillus flagellatus KT], gi\|91709501\|gb\|ABE49429.1...	183.0	[0..1]	[139..5]
gi\|78358455, gi\|... - gi\|78358455\|ref\|YP_389904.1\| thioredoxin [Desulfovibrio desulfuricans subsp. desulfuricans str. G20]...	181.0	[0..1]	[139..5]
gi\|71906567, gi\|... - gi\|71906567\|ref\|YP_284154.1\| thioredoxin [Dechloromonas aromatica RCB], gi\|71846188\|gb\|AAZ45684.1\| T...	181.0	[0..1]	[139..5]
gi\|214000651 - gi\|214000651\|ref\|ZP_03411386.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213861078 - gi\|213861078\|ref\|ZP_03385782.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213646340 - gi\|213646340\|ref\|ZP_03376393.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213615730 - gi\|213615730\|ref\|ZP_03371556.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|16761507 - gi\|16761507\|ref\|NP_457124.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|16503808, gi\|... - gi\|25282764\|pir\|\|AB0831 thioredoxin 2 [imported] - Salmonella enterica subsp. enterica serovar Typhi... gi\|29136421, gi\|... - gi\|29140796\|ref\|NP_804138.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|213026637 - gi\|213026637\|ref\|ZP_03341084.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213583758 - gi\|213583758\|ref\|ZP_03365584.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213425262 - gi\|213425262\|ref\|ZP_03358012.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213417426 - gi\|213417426\|ref\|ZP_03350568.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213161474 - gi\|213161474\|ref\|ZP_03347184.1\| thioredoxin 2 [Salmonella enterica subsp. enterica serovar Typhi str...	180.0	[0..1]	[139..1]
gi\|82701188, gi\|... - gi\|82701188\|ref\|YP_410754.1\| thioredoxin [Nitrosospira multiformis ATCC 25196], gi\|82409253\|gb\|ABB73...	178.0	[0..1]	[138..5]
gi\|78484447, gi\|... - gi\|78484447\|ref\|YP_390372.1\| thioredoxin [Thiomicrospira crunogena XCL-2], gi\|78362733\|gb\|ABB40698.1...	177.0	[0..1]	[139..1]
gi\|50122438, gi\|... - gi\|50122438\|ref\|YP_051605.1\| thioredoxin 2 [Pectobacterium atrosepticum SCRI1043], gi\|49612964\|emb\|C...	177.0	[0..1]	[139..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVCTHCQA INRIPDDRIE DAAKCGRCGH DLFDGEVINA TGETLDKLLK DDLPVVIDFW  60
   61 APWCGPCRNF APIFEDVAQE RSGKVRFVKV NTEAERELSS RFGIRSIPTI MIFKNGQVVD 120
  121 MLNGAVPKAP FDSWLNESL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.045757
Match:	1v98A
Description:	Crystal Structure Analysis of Thioredoxin from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits