YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229338812, gi...
Organism:	Vibrio cholerae bv. albensis VL426
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229338812, gi....

Description	E-value	Query Range	Subject Range
gi\|27364058, gi\|... - gi\|27364058\|ref\|NP_759586.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu... gi\|37678780, gi\|... - gi\|37678780\|ref\|NP_933389.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio vulnificu...	226.0	[0..1]	[195..1]
gi\|28805424, gi\|... - gi\|28897215\|ref\|NP_796820.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemo... gi\|28805424 - gi\|28805424\|dbj\|BAC58704.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio parahaemol...	226.0	[0..1]	[195..1]
gi\|91228495, gi\|... - gi\|91228495\|ref\|ZP_01262417.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Vibrio alginol...	225.0	[0..1]	[195..1]
gi\|89074189, gi\|... - gi\|89074189\|ref\|ZP_01160688.1\| putative ubiquinol-cytochrome c reductase,iron-sulfur subunit [Photob...	224.0	[0..1]	[194..1]
gi\|90438511, gi\|... - gi\|90580209\|ref\|ZP_01236016.1\| putative ubiquinol-cytochrome c reductase,iron-sulfur subunit [Vibrio...	222.0	[0..1]	[194..1]
gi\|87120441, gi\|... - gi\|87120441\|ref\|ZP_01076335.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Marinomonas s...	219.0	[0..1]	[195..1]
gi\|90311425, gi\|... - gi\|90407504\|ref\|ZP_01215687.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Psychromonas s...	219.0	[0..1]	[195..1]
gi\|59719232, gi\|... - gi\|59802337\|ref\|YP_209049.1\| PetA [Neisseria gonorrhoeae FA 1090], gi\|59719232\|gb\|AAW90637.1\| putati...	218.0	[0..1]	[192..1]
gi\|161594692, gi... - gi\|161869139\|ref\|YP_001598305.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men... gi\|240015608 - gi\|240015608\|ref\|ZP_04722148.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240081784 - gi\|240081784\|ref\|ZP_04726327.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|11354223 - pir\|\|F81011 ubiquinol-cytochrome c reductase, iron-sulfur chain NMB2053 [imported] - Neisseria menin... gi\|239999887 - gi\|239999887\|ref\|ZP_04719811.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|121051383, gi... - gi\|7379136\|emb\|CAB83684.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningiti... gi\|240013166 - gi\|240013166\|ref\|ZP_04720079.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|15677875, gi\|... - gi\|7227315\|gb\|AAF42373.1\| ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningit... gi\|240116900 - gi\|240116900\|ref\|ZP_04730962.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240120237 - gi\|240120237\|ref\|ZP_04733199.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240114064 - gi\|240114064\|ref\|ZP_04728554.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240114698 - gi\|240114698\|ref\|ZP_04728760.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240127244 - gi\|240127244\|ref\|ZP_04739905.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|254492755, gi... - gi\|254492755\|ref\|ZP_05105926.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240122535 - gi\|240122535\|ref\|ZP_04735491.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|240126617 - gi\|240126617\|ref\|ZP_04739503.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gono... gi\|254673758 - gi\|254673758\|emb\|CBA09435.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi... gi\|254804137, gi... - gi\|254804137\|ref\|YP_003082358.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria men... gi\|254671212 - gi\|254671212\|emb\|CBA08398.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningi... gi\|193934987, gi... - gi\|194099697\|ref\|YP_002002832.1\| Ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria gon... gi\|121635711, gi... - gi\|121635711\|ref\|YP_975956.1\| ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria mening...	218.0	[0..1]	[192..1]
gi\|83648540, gi\|... - gi\|83648540\|ref\|YP_436975.1\| ubiquinol-cytochrome c reductase, iron-sulfur subunit [Hahella chejuens...	213.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAPLNQGR RRFLTATTAV VGGLGAVAVA VPFIKSWNPS AKAKAAGAPV EVEISKLEEG  60
   61 QMVRVEWRGK PVWVVRRSQA VVEGLKSHEN QLRDPNSDEL QQPNYAQNPY RSIKPEYFIA 120
  121 VGICTHLGCS PTYLPDSFSE QVQGVKSGFF CPCHGSKFDM AGRVFQAVPA PLNLVIPPHM 180
  181 YLSDTRIVIG LDETGEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1bccE
Description:	ISP subunit of the mitochondrial cytochrome bc1-complex, watersoluble domain; Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	9.65724929491711	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	9.65724929491711	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	9.125468664417	bayes_pls_golite062009
oxidoreductase activity	6.05060612159037	bayes_pls_golite062009
electron carrier activity	5.20213585732279	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.21571853217094	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.06768260706614	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.42417427779305	bayes_pls_golite062009
cation transmembrane transporter activity	3.16998920469705	bayes_pls_golite062009
ion transmembrane transporter activity	2.96169692239126	bayes_pls_golite062009
catalytic activity	0.746741393172769	bayes_pls_golite062009
iron-sulfur cluster binding	0.71220774812099	bayes_pls_golite062009
metal cluster binding	0.71220774812099	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.0925221440840771	bayes_pls_golite062009
substrate-specific transporter activity	0.00797690232905524	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: