YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229898065, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229898065, gi....

Description	E-value	Query Range	Subject Range
gi\|77959383, gi\|... - gi\|77959383\|ref\|ZP_00823403.1\| hypothetical protein YberA_01000345 [Yersinia bercovieri ATCC 43970],...	7.0E-36	[1..90]	[1..90]
gi\|77979782, gi\|... - gi\|77979782\|ref\|ZP_00835198.1\| hypothetical protein YintA_01000277 [Yersinia intermedia ATCC 29909],...	1.0E-35	[1..90]	[1..90]
gi\|77973493 - gi\|77973493\|ref\|ZP_00829040.1\| hypothetical protein YfreA_01002643 [Yersinia frederiksenii ATCC 3364...	3.0E-35	[1..90]	[27..116]
gi\|77963721 - gi\|77963721\|ref\|ZP_00827529.1\| hypothetical protein YmolA_01000135 [Yersinia mollaretii ATCC 43969]	4.0E-35	[1..90]	[1..90]
gi\|24112604, gi\|... - gi\|24112604\|ref\|NP_707114.1\| hypothetical protein SF1208 [Shigella flexneri 2a str. 301], gi\|2405150... gi\|30062729, gi\|... - gi\|30062729\|ref\|NP_836900.1\| hypothetical protein S1292 [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|110805210, gi... - gi\|110805210\|ref\|YP_688730.1\| hypothetical protein SFV_1219 [Shigella flexneri 5 str. 8401], gi\|1106...	5.0E-32	[1..90]	[1..92]
gi\|56127554, gi\|... - gi\|56413297\|ref\|YP_150372.1\| hypothetical protein SPA1091 [Salmonella enterica subsp. enterica serov... gi\|197093699, gi... - gi\|197362222\|ref\|YP_002141859.1\| hypothetical protein SSPA1018 [Salmonella enterica subsp. enterica ... gi\|205342714, gi... - gi\|205342714\|gb\|EDZ29478.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	6.0E-32	[1..90]	[1..92]
gi\|224468256, gi... - gi\|224583729\|ref\|YP_002637527.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205272331, gi... - gi\|205352550\|ref\|YP_002226351.1\| hypothetical protein SG1335 [Salmonella enterica subsp. enterica se... gi\|207856711, gi... - gi\|207856711\|ref\|YP_002243362.1\| hypothetical protein SEN1257 [Salmonella enterica subsp. enterica s... gi\|200390000, gi... - gi\|200390000\|ref\|ZP_03216611.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204927927, gi... - gi\|204927927\|ref\|ZP_03219128.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197264010, gi... - gi\|197264010\|ref\|ZP_03164084.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198243950, gi... - gi\|198243950\|ref\|YP_002215361.1\| hypothetical protein SeD_A1539 [Salmonella enterica subsp. enterica... gi\|194710091, gi... - gi\|194734589\|ref\|YP_002114814.1\| hypothetical protein SeSA_A1921 [Salmonella enterica subsp. enteric... gi\|197212866, gi... - gi\|197249163\|ref\|YP_002146245.1\| hypothetical protein SeAg_B1355 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=ychH] [protein=hypothetical protein] [protein_id=YP_005237714.1] [location=complement(1891252.... gi\|194409301, gi... - gi\|194450997\|ref\|YP_002045827.1\| hypothetical protein SeHA_C1979 [Salmonella enterica subsp. enteric... gi\|194455343, gi... - gi\|194468979\|ref\|ZP_03074963.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195634415, gi... - gi\|195634415\|gb\|EDX52767.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194444097, gi... - gi\|194444097\|ref\|YP_002041034.1\| hypothetical protein SNSL254_A1915 [Salmonella enterica subsp. ente... gi\|168241368, gi... - gi\|205339409\|gb\|EDZ26173.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205350826, gi... - gi\|205350826\|gb\|EDZ37457.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205332120, gi... - gi\|205332120\|gb\|EDZ18884.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289188, gi... - gi\|197289188\|gb\|EDY28555.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16765123, gi\|... - gi\|16765123\|ref\|NP_460738.1\| hypothetical protein STM1782 [Salmonella typhimurium LT2], gi\|16420312\|... gi\|167553612, gi... - gi\|205322001\|gb\|EDZ09840.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167993229, gi... - gi\|205328680\|gb\|EDZ15444.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161363083, gi... - gi\|161613719\|ref\|YP_001587684.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|238913683 - gi\|238913683\|ref\|ZP_04657520.1\| hypothetical protein SentesTe_21478 [Salmonella enterica subsp. ente... gi\|62127979, gi\|... - gi\|62180346\|ref\|YP_216763.1\| hypothetical protein SC1776 [Salmonella enterica subsp. enterica serova...	7.0E-32	[1..90]	[1..92]
gi\|170020428, gi... - gi\|170020428\|ref\|YP_001725382.1\| hypothetical protein EcolC_2421 [Escherichia coli ATCC 8739], gi\|16... gi\|168802107, gi... - gi\|189375879\|gb\|EDU94295.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170683871, gi... - gi\|170683871\|ref\|YP_001743989.1\| hypothetical protein EcSMS35_1937 [Escherichia coli SMS-3-5], gi\|17... gi\|170080833, gi... - gi\|170080833\|ref\|YP_001730153.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|194434907, gi... - gi\|194434907\|ref\|ZP_03067152.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|170768338, gi... - gi\|170768338\|ref\|ZP_02902791.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... YCHH_ECOL6 - Uncharacterized protein YchH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ychH ... gi\|208728031, gi... - gi\|208808230\|ref\|ZP_03250567.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195938854 - gi\|195938854\|ref\|ZP_03084236.1\| hypothetical protein EscherichcoliO157_20922 [Escherichia coli O157:... EG11533 - DUF2583 family putative inner membrane protein / DUF2583 family putative inner membrane stress-induc... gi\|188015078, gi... - gi\|188015078\|gb\|EDU53200.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... EG11533 - DUF2583 family putative inner membrane protein / DUF2583 family putative inner membrane stress-induc... YCHH_ECO57 - Uncharacterized protein YchH OS=Escherichia coli O157:H7 GN=ychH PE=4 SV=1 gi\|168764413, gi... - gi\|189365587\|gb\|EDU84003.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|12514918, gi\|... - gi\|15801434\|ref\|NP_287451.1\| hypothetical protein Z1976 [Escherichia coli O157:H7 EDL933], gi\|125149... gi\|189356373, gi... - gi\|189356373\|gb\|EDU74792.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|187767049, gi... - gi\|187767049\|gb\|EDU30893.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189360067, gi... - gi\|189360067\|gb\|EDU78486.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189372395, gi... - gi\|189372395\|gb\|EDU90811.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189000012, gi... - gi\|189000012\|gb\|EDU68998.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|227886373, gi... - gi\|227886373\|ref\|ZP_04004178.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783657... gi\|226899924, gi... - gi\|237705167\|ref\|ZP_04535648.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238862546, gi... - gi\|238900436\|ref\|YP_002926232.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|251784711, gi... - gi\|251784711\|ref\|YP_002999015.1\| hypothetical protein B21_01190 [Escherichia coli BL21], gi\|24237698... gi\|253324840, gi... - gi\|254288095\|ref\|YP_003053843.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|253973188, gi... - gi\|254161287\|ref\|YP_003044395.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|254592075, gi... - gi\|254792675\|ref\|YP_003077512.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|75511759, gi\|... - gi\|75511759\|ref\|ZP_00734388.1\| hypothetical protein Ecol5_01003995 [Escherichia coli 53638], gi\|1884... gi\|74312455, gi\|... - gi\|74312455\|ref\|YP_310874.1\| hypothetical protein SSON_1973 [Shigella sonnei Ss046], gi\|73855932\|gb\|... gi\|191171051, gi... - gi\|75242009\|ref\|ZP_00725803.1\| hypothetical protein EcolF_01000951 [Escherichia coli F11], gi\|191171... gi\|75255059, gi\|... - gi\|75255059\|ref\|ZP_00726964.1\| hypothetical protein EcolE2_01004796 [Escherichia coli E22], gi\|19306... gi\|89108050, gi\|... - gi\|89108050\|ref\|AP_001830.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|91210426, gi\|... - gi\|91210426\|ref\|YP_540412.1\| hypothetical protein UTI89_C1399 [Escherichia coli UTI89], gi\|91072000\|... gi\|81245752, gi\|... - gi\|82544341\|ref\|YP_408288.1\| hypothetical protein SBO_1862 [Shigella boydii Sb227], gi\|81245752\|gb\|A... gi\|15830964, gi\|... - gi\|15830964\|ref\|NP_309737.1\| hypothetical protein ECs1710 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110641435, gi... - gi\|110641435\|ref\|YP_669165.1\| hypothetical protein ECP_1253 [Escherichia coli 536], gi\|110343027\|gb\|... gi\|75179196, gi\|... - gi\|75179196\|ref\|ZP_00699214.1\| hypothetical protein SboyB_01000993 [Shigella boydii BS512], gi\|18773... gi\|157077800, gi... - gi\|75190259\|ref\|ZP_00703526.1\| hypothetical protein EcolE_01003553 [Escherichia coli E24377A], gi\|15... gi\|83587349, gi\|... - gi\|83587349\|ref\|ZP_00925977.1\| hypothetical protein Ecol1_01001339 [Escherichia coli 101-1], gi\|1944... gi\|191168528, gi... - gi\|75228261\|ref\|ZP_00714916.1\| hypothetical protein EcolB7_01003398 [Escherichia coli B7A], gi\|19116... gi\|75233898, gi\|... - gi\|75233898\|ref\|ZP_00718358.1\| hypothetical protein EcolE1_01004088 [Escherichia coli E110019], gi\|1... gi\|117623423, gi... - gi\|117623423\|ref\|YP_852336.1\| hypothetical protein APECO1_321 [Escherichia coli APEC O1], gi\|1155125... gi\|157160710, gi... - gi\|75195358\|ref\|ZP_00705428.1\| hypothetical protein EcolH_01001148 [Escherichia coli HS], gi\|1571607... gi\|124500644, gi... - gi\|124528412\|ref\|ZP_01699722.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500644\|gb... gi\|194425917, gi... - gi\|75212643\|ref\|ZP_00712641.1\| hypothetical protein EcolB_01000019 [Escherichia coli B171], gi\|19442... YCHH_ECOL6 - Uncharacterized protein ychH OS=Escherichia coli O6 GN=ychH PE=4 SV=1 gi\|218694719, gi... - gi\|218694719\|ref\|YP_002402386.1\| hypothetical protein EC55989_1301 [Escherichia coli 55989], gi\|2183... gi\|218426716, gi... - gi\|218689152\|ref\|YP_002397364.1\| hypothetical protein ECED1_1353 [Escherichia coli ED1a], gi\|2184267... gi\|218704727, gi... - gi\|218704727\|ref\|YP_002412246.1\| hypothetical protein ECUMN_1502 [Escherichia coli UMN026], gi\|21843... gi\|218699912, gi... - gi\|218699912\|ref\|YP_002407541.1\| hypothetical protein ECIAI39_1541 [Escherichia coli IAI39], gi\|2183... gi\|208737688, gi... - gi\|208822203\|ref\|ZP_03262522.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208816023, gi... - gi\|208816023\|ref\|ZP_03257202.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|209918446, gi... - gi\|209918446\|ref\|YP_002292530.1\| hypothetical protein ECSE_1255 [Escherichia coli SE11], gi\|20991170... gi\|209160728, gi... - gi\|209399328\|ref\|YP_002270139.1\| hypothetical protein ECH74115_1686 [Escherichia coli O157:H7 str. E... gi\|217328167, gi... - gi\|217328167\|ref\|ZP_03444249.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215264509, gi... - gi\|215486437\|ref\|YP_002328868.1\| hypothetical protein E2348C_1328 [Escherichia coli O127:H6 str. E23... gi\|218558134, gi... - gi\|218558134\|ref\|YP_002391047.1\| hypothetical protein ECS88_1273 [Escherichia coli S88], gi\|21836490... gi\|218553759, gi... - gi\|218553759\|ref\|YP_002386672.1\| hypothetical protein ECIAI1_1226 [Escherichia coli IAI1], gi\|218360... YCHH_ECOLI - Hypothetical protein ychH - Escherichia coli	8.0E-32	[1..90]	[1..92]
gi\|81240693, gi\|... - gi\|82776545\|ref\|YP_402894.1\| hypothetical protein SDY_1254 [Shigella dysenteriae Sd197], gi\|81240693...	2.0E-31	[1..90]	[1..92]
gi\|36785412, gi\|... - gi\|37525982\|ref\|NP_929326.1\| hypothetical protein plu2065 [Photorhabdus luminescens subsp. laumondii...	2.0E-31	[1..85]	[1..85]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKSATVLG NMLMGLGLAT MVVGVGYSIL TEISELGLPQ FFAHGAIMSI FVGALLWLAG  60
   61 ARIGGREAVA DRYWWVKHFD KRCTKNQRHS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits