YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229519043, gi...
Organism:	Vibrio cholerae RC9
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229519043, gi....

Description	E-value	Query Range	Subject Range
gi\|75822836, gi\|... - gi\|75822836\|ref\|ZP_00752395.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio cholerae R... gi\|149740191, gi... - gi\|153826074\|ref\|ZP_01978741.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae MZO-2], g... gi\|229348890, gi... - gi\|229513709\|ref\|ZP_04403171.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio cho... tr\|A0A085PKZ3\|A0... - Cytochrome c-type biogenesis protein CcmE OS=Vibrio cholerae GN=ccmE PE=3 SV=1, Cytochrome c-type bi... gi\|153213713, gi... - gi\|153213713\|ref\|ZP_01948965.1\| cytochrome c-type biogenesis protein CcmE [Vibrio cholerae 1587], gi... gi\|229337642, gi... - gi\|229524061\|ref\|ZP_04413466.1\| cytochrome c-type biogenesis protein CcmE heme chaperone [Vibrio cho...	239.0	[0..1]	[160..1]
gi\|75818719, gi\|... - gi\|75818719\|ref\|ZP_00748848.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio cholerae V...	238.0	[0..1]	[160..1]
gi\|91223575, gi\|... - gi\|91223575\|ref\|ZP_01258840.1\| cytochrome c-type biogenesis protein CcmE [Vibrio alginolyticus 12G01... gi\|75854960, gi\|... - gi\|75854960\|ref\|ZP_00762627.1\| COG2332: Cytochrome c-type biogenesis protein CcmE [Vibrio sp. Ex25],...	234.0	[0..1]	[160..1]
CCME_VIBPA - Cytochrome c-type biogenesis protein CcmE OS=Vibrio parahaemolyticus GN=ccmE PE=3 SV=1 gi\|149749763, gi... - gi\|153836990\|ref\|ZP_01989657.1\| ABC superfamily [Vibrio parahaemolyticus AQ3810], gi\|149749763\|gb\|ED... CCME_VIBPA - Cytochrome c-type biogenesis protein CcmE OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 221...	233.0	[0..1]	[160..1]
gi\|90438844, gi\|... - gi\|90579959\|ref\|ZP_01235767.1\| cytochrome c-type biogenesis heme chaperone [Vibrio angustum S14], gi...	233.0	[0..1]	[160..1]
gi\|90328266, gi\|... - gi\|90411053\|ref\|ZP_01219067.1\| putative cytochrome c-type biogenesis protein CcmE [Photobacterium pr...	230.0	[0..1]	[160..1]
CCME_VIBVU - Cytochrome c-type biogenesis protein CcmE OS=Vibrio vulnificus (strain CMCP6) GN=ccmE PE=3 SV=1 CCME_VIBVY - Cytochrome c-type biogenesis protein CcmE OS=Vibrio vulnificus (strain YJ016) GN=ccmE PE=3 SV=1 CCME_VIBVU - Cytochrome c-type biogenesis protein CcmE OS=Vibrio vulnificus GN=ccmE PE=3 SV=1	229.0	[0..1]	[160..1]
CCME_VIBF1 - Cytochrome c-type biogenesis protein CcmE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ccmE PE...	228.0	[0..1]	[160..1]
CCME_PHOPR - Cytochrome c-type biogenesis protein CcmE OS=Photobacterium profundum GN=ccmE PE=3 SV=1 CCME_PHOPR - Cytochrome c-type biogenesis protein CcmE OS=Photobacterium profundum (strain SS9) GN=ccmE PE=3 SV=1	228.0	[0..1]	[160..1]
CCME_ACTSZ - Cytochrome c-type biogenesis protein CcmE OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) ...	225.0	[0..1]	[160..1]

Back

Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPRRKKRLG VVLAILFGLS ATIGLIIYAL NQNMDLFYTP TELVYGKEGK KPEIGQRLRI  60
   61 GGMVVEGSVK RDPNSLKVSF DLHDVGPSIT VTYDGILPDL FREGQGIVAQ GVLVEPTKIE 120
  121 AFEVLAKHDE NYMPPEIAEA MKKTHAPLQY SQEQKQGSDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.30103
Match:	1j6qA
Description:	Heme chaperone CcmE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.44742917397369	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: