YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254936367
Organism:	Listeria monocytogenes F6900
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254936367.

Description	E-value	Query Range	Subject Range
gi\|254852586 - gi\|254852586\|ref\|ZP_05241934.1\| hypothetical protein LmonoFSL_04521 [Listeria monocytogenes FSL R2-5... gi\|254824575 - gi\|254824575\|ref\|ZP_05229576.1\| hypothetical protein LmonFS_05389 [Listeria monocytogenes FSL J1-194... gi\|254993061 - gi\|254993061\|ref\|ZP_05275251.1\| hypothetical protein LmonocytoFSL_08501 [Listeria monocytogenes FSL ... gi\|254880564 - gi\|254880564\|ref\|ZP_05253274.1\| hypothetical protein LmonFSL_15293 [Listeria monocytogenes FSL J2-07... gi\|153166753, gi... - gi\|153166753\|ref\|ZP_01927257.1\| hemolysin A [Listeria monocytogenes FSL N1-017], gi\|133727377\|gb\|EBA... gi\|153202205, gi... - gi\|254932319\|ref\|ZP_05265678.1\| hypothetical protein LmonH_07808 [Listeria monocytogenes HPB2262], g... gi\|46907592, gi\|... - gi\|46907592\|ref\|YP_013981.1\| hemolysin A [Listeria monocytogenes str. 4b F2365], gi\|46880860\|gb\|AAT0... gi\|47093753, gi\|... - gi\|47093753\|ref\|ZP_00231503.1\| hemolysin A [Listeria monocytogenes str. 4b H7858], gi\|47017874\|gb\|EA... gi\|225876429, gi... - gi\|226223967\|ref\|YP_002758074.1\| hypothetical protein Lm4b_01375 [Listeria monocytogenes Clip81459],...	269.0	[0..1]	[274..1]
gi\|83590353, gi\|... - gi\|83590353\|ref\|YP_430362.1\| hemolysin A [Moorella thermoacetica ATCC 39073], gi\|83573267\|gb\|ABC1981...	266.0	[0..3]	[274..1]
gi\|16800471 - gi\|16800471\|ref\|NP_470739.1\| hypothetical protein lin1403 [Listeria innocua Clip11262] gi\|25313017, gi\|... - pir\|\|AB1608 conserved hypothetical protein lin1403 [imported] - Listeria innocua (strain Clip11262),...	264.0	[0..1]	[274..1]
gi\|47076822 - gi\|47076822\|dbj\|BAD18362.1\| unknown conserved protein [Geobacillus kaustophilus] gi\|56380768, gi\|... - gi\|56420926\|ref\|YP_148244.1\| hypothetical protein GK2391 [Geobacillus kaustophilus HTA426], gi\|56380...	262.0	[0..1]	[273..1]
gi\|228799208, gi... - gi\|228960444\|ref\|ZP_04122095.1\| hypothetical protein bthur0005_39110 [Bacillus thuringiensis serovar... gi\|29897815, gi\|... - gi\|30022258\|ref\|NP_833889.1\| hemolysin A [Bacillus cereus ATCC 14579], gi\|29897815\|gb\|AAP11090.1\| pu... gi\|229152378, gi... - gi\|229152378\|ref\|ZP_04280570.1\| hypothetical protein bcere0011_39160 [Bacillus cereus m1550], gi\|228... gi\|229129456, gi... - gi\|229129456\|ref\|ZP_04258427.1\| hypothetical protein bcere0015_38990 [Bacillus cereus BDRD-Cer4], gi... gi\|228671786, gi... - gi\|229111651\|ref\|ZP_04241201.1\| hypothetical protein bcere0018_38950 [Bacillus cereus Rock1-15], gi\|... gi\|228723329, gi... - gi\|229047872\|ref\|ZP_04193448.1\| hypothetical protein bcere0027_38470 [Bacillus cereus AH676], gi\|228... gi\|218161357, gi... - gi\|218233400\|ref\|YP_002368979.1\| hemolysin A [Bacillus cereus B4264], gi\|218161357\|gb\|ACK61349.1\| he...	260.0	[0..1]	[274..1]
gi\|89099258, gi\|... - gi\|89099258\|ref\|ZP_01172136.1\| putative cell adhesion protein (contact hemolysin TlyA-related) [Baci...	260.0	[0..1]	[273..1]
gi\|228648500, gi... - gi\|229134998\|ref\|ZP_04263804.1\| hypothetical protein bcere0014_39050 [Bacillus cereus BDRD-ST196], g... gi\|228747806, gi... - gi\|229013394\|ref\|ZP_04170531.1\| hypothetical protein bmyco0001_38060 [Bacillus mycoides DSM 2048], g... gi\|163941934, gi... - gi\|89207016\|ref\|ZP_01185565.1\| Hemolysin A [Bacillus weihenstephanensis KBAB4], gi\|89155045\|gb\|EAR75... gi\|228614512, gi... - gi\|229168920\|ref\|ZP_04296637.1\| hypothetical protein bcere0007_38730 [Bacillus cereus AH621], gi\|228...	260.0	[0..1]	[274..1]
gi\|52786335, gi\|... - gi\|52786335\|ref\|YP_092164.1\| YqxC [Bacillus licheniformis ATCC 14580], gi\|52348837\|gb\|AAU41471.1\| Yq...	259.0	[0..1]	[273..1]
gi\|49480918, gi\|... - gi\|49480918\|ref\|YP_038237.1\| hemolysin A [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4...	257.0	[0..1]	[274..1]
gi\|229198303, gi... - gi\|229198303\|ref\|ZP_04325010.1\| hypothetical protein bcere0001_38330 [Bacillus cereus m1293], gi\|228... gi\|228597046, gi... - gi\|229186419\|ref\|ZP_04313583.1\| hypothetical protein bcere0004_39640 [Bacillus cereus BGSC 6E1], gi\|... gi\|228625732, gi... - gi\|229157775\|ref\|ZP_04285850.1\| hypothetical protein bcere0010_39560 [Bacillus cereus ATCC 4342], gi... gi\|228659831, gi... - gi\|229123696\|ref\|ZP_04252891.1\| hypothetical protein bcere0016_39830 [Bacillus cereus 95/8201], gi\|2... gi\|254736288 - gi\|254736288\|ref\|ZP_05193994.1\| hemolysin A [Bacillus anthracis str. Western North America USA6153] gi\|254721775 - gi\|254721775\|ref\|ZP_05183564.1\| hemolysin A [Bacillus anthracis str. A1055] gi\|254683940 - gi\|254683940\|ref\|ZP_05147800.1\| hemolysin A [Bacillus anthracis str. CNEVA-9066] gi\|229600049, gi... - gi\|229600049\|ref\|YP_002868470.1\| hemolysin A [Bacillus anthracis str. A0248], gi\|229264457\|gb\|ACQ460... gi\|254757911 - gi\|254757911\|ref\|ZP_05209938.1\| hemolysin A [Bacillus anthracis str. Australia 94] gi\|49187078, gi\|... - gi\|49187078\|ref\|YP_030330.1\| hemolysin A [Bacillus anthracis str. Sterne], gi\|49181005\|gb\|AAT56381.1... gi\|254754040 - gi\|254754040\|ref\|ZP_05206075.1\| hemolysin A [Bacillus anthracis str. Vollum] gi\|51974789, gi\|... - gi\|52141320\|ref\|YP_085509.1\| hemolysin A [Bacillus cereus E33L], gi\|51974789\|gb\|AAU16339.1\| hemolysi... gi\|254741326 - gi\|254741326\|ref\|ZP_05199013.1\| hemolysin A [Bacillus anthracis str. Kruger B] gi\|30258896, gi\|... - gi\|30264251\|ref\|NP_846628.1\| hemolysin A [Bacillus anthracis str. Ames], gi\|30258896\|gb\|AAP28114.1\| ... gi\|47778290, gi\|... - gi\|47778290\|ref\|YP_021043.2\| hemolysin A [Bacillus anthracis str. 'Ames Ancestor'], gi\|47551995\|gb\|A... gi\|218538819, gi... - gi\|218905312\|ref\|YP_002453146.1\| hemolysin A [Bacillus cereus AH820], gi\|218538819\|gb\|ACK91217.1\| he... gi\|196022762, gi... - gi\|196046292\|ref\|ZP_03113518.1\| hemolysin A [Bacillus cereus 03BB108], gi\|196022762\|gb\|EDX61443.1\| h... gi\|196041645, gi... - gi\|196041645\|ref\|ZP_03108937.1\| hemolysin A [Bacillus cereus NVH0597-99], gi\|196027633\|gb\|EDX66248.1... gi\|196034836, gi... - gi\|196034836\|ref\|ZP_03102243.1\| hemolysin A [Bacillus cereus W], gi\|195992375\|gb\|EDX56336.1\| hemolys... gi\|190565875, gi... - gi\|190565875\|ref\|ZP_03018794.1\| hemolysin A [Bacillus anthracis Tsiankovskii-I], gi\|190562794\|gb\|EDV... gi\|172080472, gi... - gi\|177654811\|ref\|ZP_02936568.1\| hemolysin A [Bacillus anthracis str. A0174], gi\|172080472\|gb\|EDT6555... gi\|118418592, gi... - gi\|118479367\|ref\|YP_896518.1\| hemolysin A [Bacillus thuringiensis str. Al Hakam], gi\|118418592\|gb\|AB... gi\|228830512, gi... - gi\|228929222\|ref\|ZP_04092249.1\| hypothetical protein bthur0010_39110 [Bacillus thuringiensis serovar... gi\|227816952, gi... - gi\|227816952\|ref\|YP_002816961.1\| hemolysin A [Bacillus anthracis str. CDC 684], gi\|227003546\|gb\|ACP1... gi\|225786012, gi... - gi\|225866158\|ref\|YP_002751536.1\| hemolysin A [Bacillus cereus 03BB102], gi\|225786012\|gb\|ACO26229.1\| ... gi\|229093235, gi... - gi\|229093235\|ref\|ZP_04224353.1\| hypothetical protein bcere0021_39700 [Bacillus cereus Rock3-42], gi\|... gi\|228987367, gi... - gi\|228987367\|ref\|ZP_04147487.1\| hypothetical protein bthur0001_40390 [Bacillus thuringiensis serovar... gi\|228947893, gi... - gi\|228947893\|ref\|ZP_04110180.1\| hypothetical protein bthur0007_40200 [Bacillus thuringiensis serovar... gi\|228824251, gi... - gi\|228935499\|ref\|ZP_04098317.1\| hypothetical protein bthur0009_39460 [Bacillus thuringiensis serovar...	257.0	[0..1]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKKERADI LLVEQGLFET REKAKRAIMA GIVYRKEERV DKPGEKIPID SELQVKGKQM  60
   61 PYVSRGGLKL EKALQVFDFE VKDKLMLDIG ASTGGFTDCA LQNGARHSYA LDVGYNQLAW 120
  121 KLRNDDRVTV MERTNFRHVK PADFAEGLAD FATIDVSFIS LKLILPVLRT VLVTGGDVMT 180
  181 LIKPQFEAGR EQVGKKGIIR DPAVHESVVE HIVQFALDNG YDLMGLDYSP ITGGEGNIEF 240
  241 IAHLKWTGEE TGISHLEPDA IAKLITKAHT KLDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.39794
Match:	2oy0A
Description:	No description for 2oy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits