YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229898073, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229898073, gi....

Description	E-value	Query Range	Subject Range
gi\|77979775, gi\|... - gi\|77979775\|ref\|ZP_00835191.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia inte...	5.0E-34	[1..133]	[1..133]
gi\|238718359, gi... - gi\|77963728\|ref\|ZP_00827536.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia moll...	1.0E-33	[1..133]	[1..133]
gi\|238788552, gi... - gi\|77973500\|ref\|ZP_00829047.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia fred...	2.0E-33	[1..133]	[1..133]
gi\|238783271, gi... - gi\|77959376\|ref\|ZP_00823396.1\| COG3094: Uncharacterized protein conserved in bacteria [Yersinia berc...	3.0E-33	[1..133]	[1..133]
gi\|27359848, gi\|... - gi\|27363732\|ref\|NP_759260.1\| hypothetical protein VV1_0251 [Vibrio vulnificus CMCP6], gi\|27359848\|gb... gi\|37197859, gi\|... - gi\|37679117\|ref\|NP_933726.1\| hypothetical protein VV0933 [Vibrio vulnificus YJ016], gi\|37197859\|dbj\|...	4.0E-29	[4..131]	[1..127]
gi\|28805731, gi\|... - gi\|28897519\|ref\|NP_797124.1\| hypothetical protein VP0745 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|149745420, gi... - gi\|153842020\|ref\|ZP_01993462.1\| transcriptional regulator [Vibrio parahaemolyticus AQ3810], gi\|14974... gi\|28805731 - gi\|28805731\|dbj\|BAC59008.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	1.0E-28	[4..131]	[1..127]
gi\|75854050, gi\|... - gi\|75854050\|ref\|ZP_00761772.1\| COG3094: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex... gi\|91228929, gi\|... - gi\|91228929\|ref\|ZP_01262827.1\| hypothetical protein V12G01_15290 [Vibrio alginolyticus 12G01], gi\|91...	1.0E-28	[4..131]	[1..127]
gi\|46914431, gi\|... - gi\|54309992\|ref\|YP_131012.1\| hypothetical protein PBPRA2843 [Photobacterium profundum SS9], gi\|46914...	4.0E-28	[4..129]	[1..125]
gi\|90412792, gi\|... - gi\|90412792\|ref\|ZP_01220792.1\| hypothetical protein P3TCK_25975 [Photobacterium profundum 3TCK], gi\|...	8.0E-28	[4..129]	[1..125]
gi\|59711377, gi\|... - gi\|59711377\|ref\|YP_204153.1\| transcriptional regulator [Vibrio fischeri ES114], gi\|59479478\|gb\|AAW85... gi\|197316947, gi... - gi\|197335457\|ref\|YP_002155531.1\| transcriptional regulator [Vibrio fischeri MJ11], gi\|197316947\|gb\|A...	3.0E-27	[4..131]	[1..127]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWVDYIAMKY LHLLTVVISI TLFVLRFFWK CRGSAMLEKR WVKITPHIND TLLFISGIVL  60
   61 ILITGFYPFS PQGTWLTEKL FGVIIYILLG YVALGKRTRS QNIRWFAFIL ALGCLYLIVK 120
  121 LATTKLPLLM GYL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.920819
Match:	PF04247.3
Description:	No description for PF04247.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits