YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253774704, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253774704, gi....

Description	E-value	Query Range	Subject Range
gi\|73853309, gi\|... - gi\|73853309\|ref\|YP_308805.1\| hypothetical protein LH0160 [Escherichia coli], gi\|73476893\|gb\|AAZ76508...	484.0	[0..1]	[471..1]
gi\|218703591, gi... - gi\|218703591\|ref\|YP_002411110.1\| putative oxidoreductase subunit with NAD(P)-binding domain and ferr... gi\|227884680, gi... - gi\|227884680\|ref\|ZP_04002485.1\| electron transport protein ykgF [Escherichia coli 83972], gi\|2278382... gi\|110613925, gi... - gi\|110804377\|ref\|YP_687897.1\| hypothetical protein SFV_0318 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|26246321, gi\|... - gi\|26246321\|ref\|NP_752360.1\| putative electron transport protein ykgF [Escherichia coli CFT073], gi\|...	483.0	[0..1]	[475..1]
gi\|91209376, gi\|... - gi\|91209376\|ref\|YP_539362.1\| putative electron transport protein YkgF [Escherichia coli UTI89], gi\|9...	483.0	[0..1]	[475..1]
gi\|30061828, gi\|... - gi\|30061828\|ref\|NP_835999.1\| hypothetical protein S0280 [Shigella flexneri 2a str. 2457T], gi\|300400... gi\|24111702, gi\|... - gi\|24111702\|ref\|NP_706212.1\| hypothetical protein SF0259 [Shigella flexneri 2a str. 301], gi\|2405048...	483.0	[0..1]	[475..1]
gi\|49611375, gi\|... - gi\|50120849\|ref\|YP_050016.1\| putative electron transport protein [Pectobacterium atrosepticum SCRI10...	482.0	[0..1]	[473..1]
gi\|209917515, gi... - gi\|209917515\|ref\|YP_002291599.1\| hypothetical protein ECSE_0324 [Escherichia coli SE11], gi\|20991077... gi\|192958000, gi... - gi\|75237288\|ref\|ZP_00721335.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li...	482.0	[0..1]	[475..1]
gi\|52306858, gi\|... - gi\|52424806\|ref\|YP_087943.1\| hypothetical protein MS0751 [Mannheimia succiniciproducens MBEL55E], gi...	481.0	[0..1]	[469..1]
gi\|254791476, gi... - gi\|254791476\|ref\|YP_003076313.1\| predicted amino acid dehydrogenase with NAD(P)-binding domain and f... gi\|13359802, gi\|... - gi\|15829599\|ref\|NP_308372.1\| hypothetical protein ECs0345 [Escherichia coli O157:H7], gi\|13359802\|db... gi\|209398208, gi... - gi\|209398208\|ref\|YP_002268936.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. ... gi\|25304912, gi\|... - pir\|\|E85522 hypothetical protein ykgF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15800021, gi\|... - gi\|15800021\|ref\|NP_286033.1\| hypothetical protein Z0385 [Escherichia coli O157:H7 EDL933], gi\|125131... gi\|195937797 - gi\|195937797\|ref\|ZP_03083179.1\| hypothetical protein EscherichcoliO157_15339 [Escherichia coli O157:... gi\|13359802, gi\|... - gi\|15829599\|ref\|NP_308372.1\| hypothetical protein ECs0345 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208807074, gi... - gi\|208807074\|ref\|ZP_03249411.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|208732482, gi... - gi\|208815834\|ref\|ZP_03257013.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|208823068, gi... - gi\|208823068\|ref\|ZP_03263386.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|168775384, gi... - gi\|187769039\|gb\|EDU32883.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC419... gi\|188999843, gi... - gi\|188999843\|gb\|EDU68829.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC407... gi\|189371660, gi... - gi\|189371660\|gb\|EDU90076.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC869... gi\|168799764, gi... - gi\|189377872\|gb\|EDU96288.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC508... gi\|188016500, gi... - gi\|188016500\|gb\|EDU54622.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC411... gi\|168755869, gi... - gi\|189356878\|gb\|EDU75297.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC440... gi\|168769670, gi... - gi\|189361318\|gb\|EDU79737.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC448...	481.0	[0..1]	[475..1]
gi\|110640580, gi... - gi\|110640580\|ref\|YP_668308.1\| putative electron transport protein YkgF [Escherichia coli 536], gi\|11... gi\|191173561, gi... - gi\|75238506\|ref\|ZP_00722500.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li...	481.0	[0..1]	[475..1]
gi\|157159813, gi... - gi\|75194527\|ref\|ZP_00704597.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li... gi\|75189380, gi\|... - gi\|75189380\|ref\|ZP_00702647.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li... gi\|74310911, gi\|... - gi\|74310911\|ref\|YP_309330.1\| hypothetical protein SSON_0317 [Shigella sonnei Ss046], gi\|73854388\|gb\|... gi\|75231138, gi\|... - gi\|75231138\|ref\|ZP_00717560.1\| COG1139: Uncharacterized conserved protein containing a ferredoxin-li...	480.0	[0..1]	[475..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKTSNTDF KTRIRQQIED PIMRKAVANA QQRIGANRQK MVDELGHWEE WRDRAAQIRD  60
   61 HVLSNLDAYL YQLSEKVTQN GGHVYFARTK EDATRYILQV AQRKNARKVV KSKSMVTEEI 120
  121 GVNHVLQDAG IQVIETDLGE YILQLDQDPP SHVVVPAIHK DRHQIRRVLH ERLG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2g40A
Description:	Crystal structure of hypothetical protein (6459694) from Deinococcus radiodurans at 1.70 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.697239089161567	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [175-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEGPETPEAM TLFIRQKIRE DFLSAEIGIT GCNFAVAETG SVCLVTNEGN ARMCTTLPKT  60
   61 HIAVMGMERI APTFAEVDVL ITMLARSAVG ARLTGYNTWL TGPREAGHVD GPEEFHLVIV 120
  121 DNGRSEVLAS EFRDVLRCIR CGACMNTCPA YRHIGGHGYG SIYPGPIGAV ISPLLGGYKD 180
  181 FKDLPYACSL CTACDNVCPV RIPLSKLILR HRRVMAEKGI TAKAEQRAIK MFAYANSHPG 240
  241 LWKVGMMAGA HAASWFINGG KTPLKFGAIS DWMEARDLPE ADGESFRSWF KKHQAQEKKN 300
  301 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.30103
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: