YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229695036, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229695036, gi....

Description	E-value	Query Range	Subject Range
gi\|22125309, gi\|... - gi\|22125309\|ref\|NP_668732.1\| oxidoreductase [Yersinia pestis KIM], gi\|21958186\|gb\|AAM84983.1\|AE01374... gi\|45437331, gi\|... - gi\|45442466\|ref\|NP_994005.1\| putative oxidoreductase [Yersinia pestis biovar Microtus str. 91001], g...	1.0E-33	[1..118]	[35..152]
gi\|50120197, gi\|... - gi\|50120197\|ref\|YP_049364.1\| putative arsenate reductase [Pectobacterium atrosepticum SCRI1043], gi\|...	1.0E-32	[2..117]	[8..123]
gi\|47572214 - gi\|47572214\|ref\|ZP_00242259.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family... gi\|124260305, gi... - gi\|124267530\|ref\|YP_001021534.1\| arsenate reductase [Methylibium petroleiphilum PM1], gi\|124260305\|g...	2.0E-32	[1..117]	[1..116]
gi\|77960856, gi\|... - gi\|77960856\|ref\|ZP_00824710.1\| COG1393: Arsenate reductase and related proteins, glutaredoxin family...	4.0E-32	[1..117]	[1..117]
gi\|27361399, gi\|... - gi\|27365252\|ref\|NP_760780.1\| putative arsenate reductase [Vibrio vulnificus CMCP6], gi\|27361399\|gb\|A...	5.0E-32	[3..117]	[6..120]
gi\|37199442, gi\|... - gi\|37680693\|ref\|NP_935302.1\| arsenate reductase [Vibrio vulnificus YJ016], gi\|37199442\|dbj\|BAC95273....	9.0E-32	[3..117]	[6..120]
gi\|15074007 - gi\|15074007\|emb\|CAC45654.1\| Arsenate reductase [Sinorhizobium meliloti 1021] gi\|15964828 - gi\|15964828\|ref\|NP_385181.1\| arsenate reductase protein [Sinorhizobium meliloti 1021]	1.0E-31	[1..117]	[1..115]
gi\|28807272 - gi\|28807272\|dbj\|BAC60542.1\| arsenate reductase [Vibrio parahaemolyticus RIMD 2210633] gi\|153836983, gi... - gi\|153836983\|ref\|ZP_01989650.1\| arsenate reductase [Vibrio parahaemolyticus AQ3810], gi\|149749756\|gb... gi\|28807272, gi\|... - gi\|28899053\|ref\|NP_798658.1\| arsenate reductase [Vibrio parahaemolyticus RIMD 2210633], gi\|28807272\|...	1.0E-31	[3..117]	[2..116]
gi\|78387353, gi\|... - gi\|90422139\|ref\|YP_530509.1\| arsenate reductase [Rhodopseudomonas palustris BisB18], gi\|90104153\|gb\|...	1.0E-31	[3..117]	[2..115]
gi\|88062841 - gi\|88062841\|gb\|ABD39042.1\| arsenate reductase [Mesorhizobium loti]	2.0E-31	[1..117]	[1..115]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDVTIYHNP RCSKSRETLA LVEQQGITPQ VVLYLETPPS VDKLKELLQQ LGFSDARQLM  60
   61 RTKEDLYKTL NLDDRGLTQD QLLQAMADNP KLIERPIVVT QGKARIGRPP EQVLEILK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1jzwA
Description:	Arsenate reductase ArsC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	0.92550006805966	bayes_pls_golite062009
peroxidase activity	0.62384958394125	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	0.62384958394125	bayes_pls_golite062009
catalytic activity	0.276204095462236	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: