YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254900990
Organism:	Listeria monocytogenes J0161
Length:	532 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254900990.

Description	E-value	Query Range	Subject Range
PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus GN=pyrG PE=3 SV=1 PYRG_GEOKA - CTP synthase OS=Geobacillus kaustophilus (strain HTA426) GN=pyrG PE=3 SV=1	793.0	[0..1]	[530..1]
PYRG_CARHZ - CTP synthase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=pyrG ...	787.0	[0..1]	[530..1]
PYRG_BACLD - CTP synthase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9...	781.0	[0..1]	[530..1]
PYRG_BACHD - CTP synthase OS=Bacillus halodurans GN=pyrG PE=3 SV=1 PYRG_BACHD - CTP synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)...	778.0	[0..2]	[530..3]
gi\|221325199 - gi\|221325199\|ref\|ZP_03606493.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221320915 - gi\|221320915\|ref\|ZP_03602209.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316004 - gi\|221316004\|ref\|ZP_03597809.1\| CTP synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] PYRG_BACSU - CTP synthase OS=Bacillus subtilis GN=pyrG PE=3 SV=1 PYRG_BACSU - CTP synthase OS=Bacillus subtilis (strain 168) GN=pyrG PE=3 SV=1	777.0	[0..1]	[530..1]
gi\|134301012, gi... - gi\|88945575\|ref\|ZP_01148743.1\| CTP synthase [Desulfotomaculum reducens MI-1], gi\|88924801\|gb\|EAR4379...	776.0	[0..1]	[532..1]
PYRG_BACCN - CTP synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=pyrG P...	776.0	[0..1]	[532..1]
PYRG_BACAC - CTP synthase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pyrG PE=3 SV=1 gi\|47506052, gi\|... - gi\|47530904\|ref\|YP_022253.1\| CTP synthetase [Bacillus anthracis str. 'Ames Ancestor'], gi\|47506052\|g... PYRG_BACAA - CTP synthase OS=Bacillus anthracis (strain A0248) GN=pyrG PE=3 SV=1 gi\|30265362, gi\|... - gi\|30265362\|ref\|NP_847739.1\| CTP synthetase [Bacillus anthracis str. Ames], gi\|30260040\|gb\|AAP29225.... gi\|254687220 - gi\|254687220\|ref\|ZP_05151078.1\| CTP synthetase [Bacillus anthracis str. CNEVA-9066] gi\|21397814, gi\|... - gi\|65317316\|ref\|ZP_00390275.1\| COG0504: CTP synthase (UTP-ammonia lyase) [Bacillus anthracis str. A2... gi\|254724693 - gi\|254724693\|ref\|ZP_05186476.1\| CTP synthetase [Bacillus anthracis str. A1055] gi\|254735267 - gi\|254735267\|ref\|ZP_05192976.1\| CTP synthetase [Bacillus anthracis str. Western North America USA615... gi\|254755808 - gi\|254755808\|ref\|ZP_05207840.1\| CTP synthetase [Bacillus anthracis str. Vollum] gi\|254762148 - gi\|254762148\|ref\|ZP_05213994.1\| CTP synthetase [Bacillus anthracis str. Australia 94] PYRG_BACAN - CTP synthase OS=Bacillus anthracis GN=pyrG PE=3 SV=1 gi\|49182100, gi\|... - gi\|49188173\|ref\|YP_031426.1\| CTP synthetase [Bacillus anthracis str. Sterne], gi\|49182100\|gb\|AAT5747... gi\|167640382, gi... - gi\|167640382\|ref\|ZP_02398646.1\| CTP synthase [Bacillus anthracis str. A0193], gi\|167511602\|gb\|EDR869... gi\|164712947, gi... - gi\|165871280\|ref\|ZP_02215929.1\| CTP synthase [Bacillus anthracis str. A0488], gi\|164712947\|gb\|EDR184... gi\|170708086, gi... - gi\|170708086\|ref\|ZP_02898534.1\| CTP synthase [Bacillus anthracis str. A0389], gi\|170127059\|gb\|EDS959... gi\|170667827, gi... - gi\|170688134\|ref\|ZP_02879345.1\| CTP synthase [Bacillus anthracis str. A0465], gi\|170667827\|gb\|EDT185... gi\|190559761, gi... - gi\|190569093\|ref\|ZP_03021992.1\| CTP synthase [Bacillus anthracis Tsiankovskii-I], gi\|190559761\|gb\|ED... gi\|177651918, gi... - gi\|177651918\|ref\|ZP_02934501.1\| CTP synthase [Bacillus anthracis str. A0174], gi\|172082622\|gb\|EDT676...	775.0	[0..1]	[532..1]
gi\|195990880, gi... - gi\|196036547\|ref\|ZP_03103942.1\| CTP synthase [Bacillus cereus W], gi\|195990880\|gb\|EDX54853.1\| CTP sy... PYRG_BACHK - CTP synthase OS=Bacillus thuringiensis subsp. konkukian GN=pyrG PE=3 SV=1 gi\|229187564, gi... - gi\|229187564\|ref\|ZP_04314704.1\| CTP synthase [Bacillus cereus BGSC 6E1], gi\|228595931\|gb\|EEK53611.1\|... PYRG_BACAH - CTP synthase OS=Bacillus thuringiensis (strain Al Hakam) GN=pyrG PE=3 SV=1 gi\|228810632, gi... - gi\|228949059\|ref\|ZP_04111331.1\| CTP synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1], g... PYRG_BACC3 - CTP synthase OS=Bacillus cereus (strain 03BB102) GN=pyrG PE=3 SV=1 PYRG_BACHK - CTP synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pyrG PE=3 SV=1 gi\|196023776, gi... - gi\|196045569\|ref\|ZP_03112800.1\| CTP synthase [Bacillus cereus 03BB108], gi\|196023776\|gb\|EDX62452.1\| ... gi\|196040969, gi... - gi\|196040969\|ref\|ZP_03108266.1\| CTP synthase [Bacillus cereus NVH0597-99], gi\|196028137\|gb\|EDX66747....	774.0	[0..1]	[532..1]
gi\|229158899, gi... - gi\|229158899\|ref\|ZP_04286956.1\| CTP synthase [Bacillus cereus ATCC 4342], gi\|228624510\|gb\|EEK81280.1... gi\|228658633, gi... - gi\|229124842\|ref\|ZP_04254020.1\| CTP synthase [Bacillus cereus 95/8201], gi\|228658633\|gb\|EEL14295.1\| ... gi\|228988565, gi... - gi\|228988565\|ref\|ZP_04148652.1\| CTP synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1],... PYRG_BACC0 - CTP synthase OS=Bacillus cereus (strain AH820) GN=pyrG PE=3 SV=1 gi\|228930347, gi... - gi\|228930347\|ref\|ZP_04093351.1\| CTP synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4B... PYRG_BACCZ - CTP synthase OS=Bacillus cereus (strain ZK / E33L) GN=pyrG PE=3 SV=1	774.0	[0..1]	[532..1]

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Predicted Domain #1

Region A:
Residues: [1-532]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKYIFVTGG VVSSIGKGIT AASLGRLLKN RGLSVTIQKF DPYINVDPGT MSPYQHGEVY  60
   61 VTDDGAETDL DLGHYERFID INLNKYSNVT TGKVYSEVIK KERRGDYLGG TVQVIPHITN 120
  121 ELKDRVFRAA RMTNSDIIIT EIGGTVGDIE SLPFLEAIRQ IKGDVGAENV LYIHTTLIPY 180
  181 IKAAGEMKTK PTQHSVKELR SLGIQPNIIV VRTEQPVSQE MKDKIALFCD IKASEVIESR 240
  241 DEETLYNVPL SLQKQKMDDI VLEHLQLEAP QAEMTDWKNL VHRVKNLSKK VRIGLVGKYV 300
  301 SLQDAYLSVA EALRHAGYDH DAEIEIDWID SEKVTKENVA EIMKDVDGIL VPGGFGDRAI 360
  361 EGKIAAIEYA RVNKVPYFGI CLGMQLATVE FARNVLGLEG AHSAEIEPET NHNIIDLLPE 420
  421 QKNIENMGGT LRLGLYPARI KQGTKAEAAY GTTLVEERHR HRYEFNNEYR EQMEEAGMIV 480
  481 SATSPDGRLV EVVELIDHPW FVACQYHPEF ISRPNRPQSL FKDFVGAALK NK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits