YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229124462, gi...
Organism:	Bacillus cereus 95/8201
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229124462, gi....

Description	E-value	Query Range	Subject Range
gi\|42740035, gi\|... - gi\|42784104\|ref\|NP_981351.1\| phosphoglucomutase/phosphomannomutase family protein [Bacillus cereus A...	0.0	[1..574]	[1..574]
gi\|51974074, gi\|... - gi\|52140605\|ref\|YP_086224.1\| phosphomannomutase [Bacillus cereus E33L], gi\|51974074\|gb\|AAU15624.1\| p...	0.0	[1..574]	[1..574]
gi\|47566955, gi\|... - gi\|47566955\|ref\|ZP_00237672.1\| phosphoglucomutase/phosphomannomutase family protein [Bacillus cereus...	0.0	[1..574]	[1..574]
gi\|228653293, gi... - gi\|229130179\|ref\|ZP_04259139.1\| Phosphomannomutase [Bacillus cereus BDRD-Cer4], gi\|228653293\|gb\|EEL0... gi\|29898519, gi\|... - gi\|30022960\|ref\|NP_834591.1\| phosphoglucomutase [Bacillus cereus ATCC 14579], gi\|29898519\|gb\|AAP1179...	0.0	[1..574]	[1..574]
gi\|228856195, gi... - gi\|228903420\|ref\|ZP_04067547.1\| Phosphomannomutase [Bacillus thuringiensis IBL 4222], gi\|228856195\|g... gi\|74492257, gi\|... - gi\|75760262\|ref\|ZP_00740315.1\| PHOSPHOGLUCOMUTASE / PHOSPHOMANNOMUTASE [Bacillus thuringiensis sero...	0.0	[1..574]	[1..574]
gi\|89200233, gi\|... - gi\|89200233\|ref\|ZP_01178988.1\| Phosphoglucomutase/phosphomannomutase C terminal:Phosphoglucomutase/p...	0.0	[1..574]	[1..574]
gi\|163864832, gi... - gi\|89206105\|ref\|ZP_01184668.1\| Phosphoglucomutase/phosphomannomutase C terminal:Phosphoglucomutase/p...	0.0	[1..574]	[1..574]
gi\|56421832, gi\|... - gi\|56421832\|ref\|YP_149150.1\| phosphomannomutase [Geobacillus kaustophilus HTA426], gi\|56381674\|dbj\|B...	0.0	[1..574]	[1..574]
gi\|15613669, gi\|... - gi\|15613669\|ref\|NP_241972.1\| phosphomannomutase [Bacillus halodurans C-125], gi\|10173721\|dbj\|BAB0482... gi\|25331881 - pir\|\|B83788 phosphomannomutase BH1106 [imported] - Bacillus halodurans (strain C-125)	0.0	[1..574]	[1..574]
gi\|171989232, gi... - gi\|68054628\|ref\|ZP_00538785.1\| Phosphoglucomutase/phosphomannomutase C terminal:Phosphoglucomutase/p...	0.0	[1..574]	[1..574]

Back

Predicted Domain #1

Region A:
Residues: [1-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWKQEFSRW LSYAELDAEL KEQLENMKQD EKKIEDSFYK NLEFGTGGMR GELGAGTNRL  60
   61 NVYTVRKATQ GLAKFIEKLG EEAKKRGVVV AYDSRHKSPE FAMEVAATLG AHGITTYVFE 120
  121 SLRPTPVLSF AVRHLHTVSG IVLTASHNPP EYNGYKVYGE DGGQLPPKEA DELISYVNAV 180
  181 EDELTVEVAD VEQLKADGLL HMIGQEVDDA YAAELNNVII NKEMVQKVGK DLKIVFTPLH 240
  241 GTSNLSVRRG LAEVGFTDVT VVKEQELPDP NFSTVKSPNP EEHAAFEYAI RDGEKVGADV 300
  301 LIATDPDADR LGVAVRNHDG EFQVLTGNQT GALMLDYLLS QKKENGTLPE NGVVLKTIVT 360
  361 SEIGRTIAKA YGLDTVDTLT GFKFIGEKIK QYEESGQYEF QFGYEESYGY LIRPFCRDKD 420
  421 AVQSVLFACE VAAYYKSQGK TLYDGLLEVF EKYGFFREDL VSLTLKGKDG AEQIQEMMAT 480
  481 FRENPPKEVA GLTVVAVEDY KASIITSLQD GHKEEIHLPK SNVLKYQLED GSWFCLRPSG 540
  541 TEPKIKFYFG VQDNSLQNSE QKLLTIKEDI MNRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	1c47A
Description:	Phosphoglucomutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.61980820714401	bayes_pls_golite062009
intramolecular transferase activity, phosphotransferases	0.9938893438261	bayes_pls_golite062009
phosphomannomutase activity	0.96914970670646	bayes_pls_golite062009
catalytic activity	0.792640318995558	bayes_pls_golite062009
isomerase activity	0.340395019264179	bayes_pls_golite062009
phosphoglucomutase activity	0.268745464529951	bayes_pls_golite062009
protein binding	0.259532204752794	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: