YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254791821, gi...
Organism:	Escherichia coli O157:H7 str. TW14359
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254791821, gi....

Description	E-value	Query Range	Subject Range
gi\|17134355, gi\|... - gi\|17232708\|ref\|NP_489256.1\| hypothetical protein alr5216 [Nostoc sp. PCC 7120], gi\|17134355\|dbj\|BAB... gi\|25302934 - pir\|\|AH2457 hypothetical protein alr5216 [imported] - Nostoc sp. (strain PCC 7120)	251.0	[0..6]	[289..153]
gi\|75702703, gi\|... - gi\|75908978\|ref\|YP_323274.1\| hypothetical protein Ava_2766 [Anabaena variabilis ATCC 29413], gi\|7570...	249.0	[0..6]	[289..153]
CORC_SALTY - Magnesium and cobalt efflux protein CorC OS=Salmonella typhimurium GN=corC PE=1 SV=1 gi\|213852455 - gi\|213852455\|ref\|ZP_03381987.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|213608002 - gi\|213608002\|ref\|ZP_03368828.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|213425077 - gi\|213425077\|ref\|ZP_03357827.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|213417191 - gi\|213417191\|ref\|ZP_03350335.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|62179265, gi\|... - gi\|62179265\|ref\|YP_215682.1\| CBS domain-containing protein [Salmonella enterica subsp. enterica sero... gi\|224582502, gi... - gi\|224582502\|ref\|YP_002636300.1\| hemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|56128461, gi\|... - gi\|56414204\|ref\|YP_151279.1\| haemolysin-related protein [Salmonella enterica subsp. enterica serovar... gi\|214000745 - gi\|214000745\|ref\|ZP_03411480.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|213973557 - gi\|213973557\|ref\|ZP_03400816.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|238911617 - gi\|238911617\|ref\|ZP_04655454.1\| hemolysin-related protein [Salmonella enterica subsp. enterica serov... CORC_SALTY - Magnesium and cobalt efflux protein corC OS=Salmonella typhimurium GN=corC PE=3 SV=1 CORC_SALTY - Magnesium and cobalt efflux protein CorC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... gi\|29142608, gi\|... - gi\|29142608\|ref\|NP_805950.1\| haemolysin-related protein [Salmonella enterica subsp. enterica serovar... CORC_SALTI - Magnesium and cobalt efflux protein corC OS=Salmonella typhi GN=corC PE=3 SV=1 lcl\|NC_016856.1_... - [gene=ybeX] [protein=putative transport protein] [protein_id=YP_005236383.1] [location=complement(73... CORC_SALTI - Magnesium and cobalt efflux protein CorC OS=Salmonella typhi GN=corC PE=3 SV=1 gi\|16759619 - gi\|16759619\|ref\|NP_455236.1\| haemolysin-related protein [Salmonella enterica subsp. enterica serovar... gi\|197938892, gi... - gi\|198244376\|ref\|YP_002214655.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp... gi\|197094605, gi... - gi\|197363128\|ref\|YP_002142765.1\| haemolysin-related protein [Salmonella enterica subsp. enterica ser... gi\|197241771, gi... - gi\|197263516\|ref\|ZP_03163590.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp.... gi\|197212843, gi... - gi\|197249140\|ref\|YP_002145643.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp... gi\|213161075 - gi\|213161075\|ref\|ZP_03346785.1\| haemolysin-related protein [Salmonella enterica subsp. enterica sero... gi\|206707935, gi... - gi\|207856132\|ref\|YP_002242783.1\| haemolysin-related protein [Salmonella enterica subsp. enterica ser... gi\|205271733, gi... - gi\|205351952\|ref\|YP_002225753.1\| haemolysin-related protein [Salmonella enterica subsp. enterica ser... gi\|199601813, gi... - gi\|200389368\|ref\|ZP_03215979.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp.... gi\|205347102, gi... - gi\|205347102\|gb\|EDZ33733.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp. ent... gi\|168240516, gi... - gi\|205340131\|gb\|EDZ26895.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp. ent... gi\|205331005, gi... - gi\|205331005\|gb\|EDZ17769.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp. ent... gi\|161615115, gi... - gi\|161615115\|ref\|YP_001589080.1\| hypothetical protein SPAB_02882 [Salmonella enterica subsp. enteric... gi\|194451065, gi... - gi\|194451065\|ref\|YP_002044702.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp... gi\|194401682, gi... - gi\|194443019\|ref\|YP_002039911.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp... gi\|168820208, gi... - gi\|205343045\|gb\|EDZ29809.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp. ent... gi\|168465844, gi... - gi\|195631985\|gb\|EDX50505.1\| magnesium and cobalt efflux protein CorC [Salmonella enterica subsp. ent...	247.0	[0..1]	[292..1]
gi\|55980703, gi\|... - gi\|55980703\|ref\|YP_144000.1\| hemolysin-related protein [Thermus thermophilus HB8], gi\|55772116\|dbj\|B...	247.0	[0..25]	[274..179]
gi\|188493543, gi... - gi\|75511303\|ref\|ZP_00733997.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Escherichia coli 53...	247.0	[0..1]	[292..1]
gi\|147920421, gi... - gi\|147920421\|ref\|YP_685804.1\| hypothetical protein RCIX1155 [uncultured methanogenic archaeon RC-I],...	246.0	[0..6]	[289..153]
gi\|83569118, gi\|... - gi\|83569118\|ref\|ZP_00920578.1\| COG4535: Putative Mg2+ and Co2+ transporter CorC [Shigella dysenteria...	245.0	[0..1]	[292..1]
gi\|3639065 - gi\|3639065\|gb\|AAC36474.1\| integral membrane protein CorC [Salmonella typhimurium] gi\|3639065\|gb\|AA... - integral membrane protein CorC [Salmonella typhimurium]	245.0	[0..1]	[292..1]
gi\|186685548, gi... - gi\|23128749\|ref\|ZP_00110588.1\| COG1253: Hemolysins and related proteins containing CBS domains [Nost...	244.0	[0..6]	[289..153]
gi\|37525276, gi\|... - gi\|37525276\|ref\|NP_928620.1\| magnesium and cobalt efflux protein CorC [Photorhabdus luminescens subs...	244.0	[0..1]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDNSHSSD TISNKKGFFS LLLSQLFHGE PKNRDELLAL IRDSGQNDLI DEDTRDMLEG  60
   61 VMDIADQRVR DIMIPRSQMI TLKRNQTLDE CLDVIIESAH SRFPVISEDK DHIEGILMAK 120
  121 DLLPFMRSDA EAFSMDKVLR QAVVVPESKR VDRMLKEFRS QRYHMAIVID EFGGVSGLVT 180
  181 IEDILELIVG EIEDEYDEED DIDFRQLSRH TWTVRALASI EDFNEAFGTH FSDEEVDTIG 240
  241 GLVMQAFGHL PARGETIDID GYQFKVAMAD SRRIIQVHVK IPDDSPQPKL DE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	1vrdA
Description:	Crystal structure of Inosine-5'-monophosphate dehydrogenase (TM1347) from THERMOTOGA MARITIMA at 2.18 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.755597949242415	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: