| Protein: | gi|229838306, gi... |
| Organism: | Yersinia pestis biovar Orientalis str. PEXU2 |
| Length: | 656 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229838306, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..655] | [1..655] |
|
|
0.0 | [1..656] | [1..656] |
|
|
0.0 | [1..655] | [1..655] |
|
|
0.0 | [1..655] | [1..655] |
|
|
0.0 | [1..655] | [1..655] |
|
|
0.0 | [1..650] | [1..651] |
|
|
0.0 | [1..650] | [1..651] |
|
|
0.0 | [1..650] | [1..651] |
|
|
0.0 | [1..651] | [1..652] |
|
|
0.0 | [1..654] | [1..654] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MIPEIGSFLL CLALAISLLL SLYPQWGAAR QDARMMAVGR PLTYGMFAAI TLSFICLIYA 60
61 FVVNDFTVSY VAANSNSYLP IYYRIAASWG AHEGSLLLWV LLLSCWSLAV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [111-301] |
1 11 21 31 41 51
| | | | | |
1 ALFSRSMPED AVARVLSVLG MITGGFLLFI ILTSNPFSRT LPDFPIDGRD LNPLLQDVGL 60
61 IFHPPLLYMG YVGFSVAFAF AIASLMAGRL DSAWARWSRP WTQAAWIFLT LGIVLGSAWA 120
121 YYELGWGGWW FWDPVENASF MPWLAGTALI HSLAVTEKRG TFKAWTVLLA ITAFSLCLMG 180
181 TFLVRSGVLV S
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [302-475] |
1 11 21 31 41 51
| | | | | |
1 VHSFASDPAR GMFILAYLVI VIGGSLLLYA VKGAQVRSRT QHEVFSRETF LLGNNVLLIA 60
61 AMLVVLLGTL LPLVHKQLGL GSISIGEPFF NTMFTWLMAP MALLMGIGPL VRWRRDEPSK 120
121 LWKRLSVALV VTLLLSISVP WLLQDSVAGM TVVGLMMAIW VIILTLMELH ERAT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [476-656] |
1 11 21 31 41 51
| | | | | |
1 HRYGFWRGLT HLSRSHWGMV LGHLGVAVTV IGIAFSQNYS VERDVRMKAG DSIDIHDYHF 60
61 TFRDVHDIKG PNYTGGVGII DVTRNGKLEA TLHAEKRYYS VARSMMTEAA IDGGLTRDLY 120
121 AALGEELGDG SWAVRLYYKP FVRWIWFGGI FMAVGGIFCM LDPRYRMSKK LKRGAIPEAE 180
181 S
|
| Detection Method: | |
| Confidence: | 0.958 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.71147761865804 | bayes_pls_golite062009 |
| nucleic acid binding | 1.37456571378489 | bayes_pls_golite062009 |
| DNA binding | 1.29551294358449 | bayes_pls_golite062009 |
| protein binding | 0.71093987479987 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.430797581413272 | bayes_pls_golite062009 |
