YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229523456, gi...
Organism:	Vibrio cholerae TM 11079-80
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229523456, gi....

Description	E-value	Query Range	Subject Range
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	247.0	[0..3]	[228..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	245.0	[0..1]	[225..1]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	245.0	[0..1]	[227..1]
gi\|134051275, gi... - gi\|88945490\|ref\|ZP_01148660.1\| Response regulator receiver [Desulfotomaculum reducens MI-1], gi\|8892...	244.0	[0..3]	[227..2]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	244.0	[0..2]	[226..3]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	242.0	[0..2]	[226..3]
gi\|48860348, gi\|... - gi\|67873291\|ref\|ZP_00503570.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	242.0	[0..2]	[228..4]
gi\|69142765, gi\|... - gi\|92116259\|ref\|YP_575988.1\| two component transcriptional regulator [Nitrobacter hamburgensis X14],...	241.0	[0..1]	[228..1]
gi\|82402957, gi\|... - gi\|82499061\|ref\|ZP_00884513.1\| Response regulator receiver [Caldicellulosiruptor saccharolyticus DSM...	241.0	[0..3]	[226..1]
gi\|82945310, gi\|... - gi\|83310469\|ref\|YP_420733.1\| response regulator [Magnetospirillum magneticum AMB-1], gi\|82945310\|dbj...	240.0	[0..2]	[228..11]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRILVVED EAPIREMLCF VLEQKGYQAV EAEDYDSAMS KLAEPFPDLV LLDWMLPGGS  60
   61 GINLIKHMKR EEMTRNIPVV MLTARGEEED KVRGLEVGAD DYITKPFSPK ELVARLKAVI 120
  121 RRVTPTALED VIDVQGLKLD PVSHRVTAND QPLDMGPTEF KMLHFFMTHQ ERVYSREQLL 180
  181 NNVWGTNVYV EDRTVDVHIR RLRKALEDAG HDKLIQTVRG AGYRFSTKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits