YRC Public Data Repository - Protein Structure Prediction

Protein:	RT12_PONPY
Organism:	Pongo pygmaeus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT12_PONPY.

Description	E-value	Query Range	Subject Range
MRPS12 - mitochondrial ribosomal protein S12	172.0	[0..1]	[139..1]
gi\|109124637, gi... - gi\|109124641\|ref\|XP_001086380.1\| PREDICTED: similar to mitochondrial ribosomal protein S12 precursor...	172.0	[0..1]	[139..1]
sp\|O15235\|RT12_H... - 28S ribosomal protein S12, mitochondrial OS=Homo sapiens GN=MRPS12 PE=1 SV=1 VAR_051820, 28S ribosom... gi\|114677135, gi... - gi\|55649195\|ref\|XP_524259.1\| PREDICTED: mitochondrial ribosomal protein S12 isoform 4 [Pan troglodyt...	171.0	[0..1]	[139..1]
gi\|74275829, gi\|... - gi\|75437463\|ref\|ZP_00733433.1\| 30S ribosomal protein S12 [Actinobacillus succinogenes 130Z], gi\|7427...	171.0	[0..30]	[139..19]
gi\|60117171, gi\|... - gi\|60139438\|ref\|YP_209614.1\| ribosomal protein S12 [Huperzia lucidula], gi\|60117171\|ref\|YP_209505.1\|...	171.0	[0..30]	[139..1]
gi\|24114606, gi\|... - ref\|NP_709116.1\| 30S ribosomal subunit protein S12 [Shigella flexneri 2a str. 301], gb\|AAN44823.1\| ... gi\|26249940, gi\|... - gi\|26249940\|ref\|NP_755980.1\| 30S ribosomal protein S12 [Escherichia coli CFT073], gi\|26110368\|gb\|AAN... gi\|226902337, gi... - gi\|237703073\|ref\|ZP_04533554.1\| 30S ribosomal subunit protein S12 [Escherichia sp. 3_2_53FAA], gi\|22... gi\|254038504, gi... - gi\|254038504\|ref\|ZP_04872560.1\| 30S ribosomal subunit protein S12 [Escherichia sp. 1_1_43], gi\|22683... gi\|91074392, gi\|... - gi\|91212818\|ref\|YP_542804.1\| 30S ribosomal subunit protein S12 [Escherichia coli UTI89], gi\|91074392...	171.0	[0..16]	[139..7]
gi\|149056449, gi... - gi\|27730973\|ref\|XP_214890.1\| PREDICTED: similar to 28S ribosomal protein S12, mitochondrial precurso...	170.0	[0..1]	[139..1]
gi\|62129585, gi\|... - gi\|62181952\|ref\|YP_218369.1\| 30S ribosomal protein S12 [Salmonella enterica subsp. enterica serovar ...	170.0	[0..16]	[139..7]
gi\|56313632, gi\|... - gi\|56477589\|ref\|YP_159178.1\| 30S ribosomal protein S12 [Azoarcus sp. EbN1], gi\|56313632\|emb\|CAI08277...	169.0	[0..26]	[139..9]
gi\|33575063, gi\|... - gi\|33599017\|ref\|NP_886577.1\| 30S ribosomal protein S12 [Bordetella bronchiseptica RB50], gi\|33575063...	169.0	[0..27]	[139..19]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWSGPLRGL NTSLTCGPAL VPRLWATCSM ATLNQMHRLG GPPKRPPQKL GPTEGRPQLK  60
   61 GVVLCTFTRK PKKPNSANRK CCRVRLSTGQ EAVCFIPGEG HTLQEHQIVL VEGGRTQDLP 120
  121 GVKLTVVRGK YDCGHVQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	2f4vL
Description:	No description for 2f4vL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits