YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5L_PONPY
Organism:	Pongo pygmaeus
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5L_PONPY.

Description	E-value	Query Range	Subject Range
gi\|12842190, gi\|... - gi\|12842190\|dbj\|BAB25507.1\| unnamed protein product [Mus musculus], gi\|12841973\|dbj\|BAB25423.1\| unna...	165.0	[0..1]	[103..1]
gi\|74354012 - gi\|74354012\|gb\|AAI02456.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G [Bos t...	162.0	[0..1]	[103..1]
gi\|47058994, gi\|... - gi\|47058994\|ref\|NP_997681.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G [Rat...	162.0	[0..1]	[103..1]
gi\|109108866 - gi\|109108866\|ref\|XP_001098196.1\| PREDICTED: similar to ATP synthase, H+ transporting, mitochondrial ... CB370802-1-1-309 - null ATP5L - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G gi\|114640627, gi... - gi\|114640629\|ref\|XP_001161474.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,... HGNC:14247\|Ensem... - synthase, H+ transporting, mitochondrial Fo complex, subunit G gi\|117644952 - gi\|117644952\|emb\|CAL37942.1\| hypothetical protein [synthetic construct]	161.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFVRNLVE KTPALVNAAV TYSKPRLATF WYYAKVELVP PTPAEIPRAI QGLKKIVNSA  60
   61 QTGSFKQLTV KEAVLNGLVA TEVLMWFYVG EIIGKRGIIG YDV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.886057
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.940	0.021	hydrogen ion transporting ATP synthase activity, rotational mechanism	a.7.1	Spectrin repeat
View	Download	0.838	0.018	transport	a.47.2	t-snare proteins
View	Download	0.943	0.004	transport	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.874	0.003	hydrogen ion transporting ATP synthase activity, rotational mechanism	a.7.6	Ribosomal protein S20
View	Download	0.790	N/A	N/A	a.47.2	t-snare proteins

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	4.10635212185386	bayes_pls_golite062009
transporter activity	2.5115273539484	bayes_pls_golite062009
transmembrane transporter activity	2.37965569779401	bayes_pls_golite062009
substrate-specific transporter activity	2.30178679721663	bayes_pls_golite062009
active transmembrane transporter activity	1.85306652517261	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.85270395795503	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.46365647535669	bayes_pls_golite062009
binding	1.05385274473086	bayes_pls_golite062009
transferase activity	0.643359023550765	bayes_pls_golite062009
catalytic activity	0.445130366520144	bayes_pls_golite062009
protein binding	0.116583472520174	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: