YRC Public Data Repository - Protein Structure Prediction

Protein:	CCDC76
Organism:	Homo sapiens
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCDC76.

Description	E-value	Query Range	Subject Range
gi\|7023747, gi\|5... - gi\|7023747\|dbj\|BAA92074.1\| unnamed protein product [Homo sapiens], gi\|50370008\|gb\|AAH75811.1\| Coiled...	0.0	[1..481]	[1..481]
gi\|114557883 - gi\|114557883\|ref\|XP_001160498.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	0.0	[1..481]	[1..481]
gi\|109011463 - gi\|109011463\|ref\|XP_001106928.1\| PREDICTED: similar to CG18048-PA [Macaca mulatta]	0.0	[1..481]	[1..481]
TRM13_MOUSE - tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus GN=Trmt13 PE=2 SV=1	0.0	[2..478]	[3..477]
gi\|109467481, gi... - gi\|197927149\|ref\|NP_001029074.2\| coiled-coil domain containing 76 [Rattus norvegicus], gi\|183986268\|...	0.0	[2..478]	[3..477]
gi\|73959992 - gi\|73959992\|ref\|XP_537056.2\| PREDICTED: similar to CG18048-PA [Canis familiaris]	0.0	[2..480]	[3..467]
gi\|50751254 - gi\|50751254\|ref\|XP_422313.1\| PREDICTED: similar to hypothetical protein FLJ10287 [Gallus gallus]	0.0	[18..472]	[21..494]
gi\|49257236, gi\|... - gi\|49257236\|gb\|AAH71110.1\| MGC81280 protein [Xenopus laevis], gi\|147904082\|ref\|NP_001085344.1\| MGC81...	0.0	[14..471]	[26..466]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSATSPHA PGFPAEGRCG YYVEKKKRFC RMVVAAGKRF CGEHAGAAEE EDARKRILCP  60
   61 LDPKHTVYED QLAKHLKKCN SREKPKPDFY IQDINAGLRD ETEIPEQLVP ISSLSEEQLE 120
  121 KLIKKLRKAS EGLNSTLKDH IMSHPALHDA LNDPKNGDSA TKHLKQQASI LGNIENLKLL 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRRCFVEFG AGKGKLSHWV DIALKDAEKV HFILVEKVTT RFKVDGKHRK KNSVFERLQI  60
   61 DIQHLCLNKI PVL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [254-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REEKLPVVGI GKHLCGMATD LALRCLVETY AASFEERNEE PLAKRIKNDK TEKEIYTLAK  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.805	a.17.1	p8-MTCP1

Predicted Domain #4

Region A:
Residues: [314-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGNEKNVPEK WNPVAGIVIA LCCHHRCDWR HYVGKEYFRA LGLGAVEFHY FQRMSSWATC  60
   61 GMRKTSLETS NSTTKRQDNQ NDDSEEHDDG GYRITDDGAD CLPGLLSVEE KKKIGHLCKL 120
  121 LIDQGRIQYL QQKGFSPALQ YYTDPLVSLE NVLLTALPNH SSSPETTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits