YRC Public Data Repository - Protein Structure Prediction

Protein:	ABCF3
Organism:	Homo sapiens
Length:	709 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ABCF3.

Description	E-value	Query Range	Subject Range
gi\|15158466, gi\|... - gi\|15890270\|ref\|NP_355942.1\| hypothetical protein AGR_L_318 [Agrobacterium tumefaciens str. C58], gi... gi\|25384809 - pir\|\|E98150 hypothetical ABC transporter ATP-binding protein in bcr 5'region [imported] - Agrobacter...	0.0	[148..705]	[16..590]
gi\|48786149, gi\|... - gi\|91778544\|ref\|YP_553752.1\| ABC peptide transporter, duplicated ATPase subunits [Burkholderia xenov...	0.0	[174..704]	[1..555]
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	0.0	[174..705]	[10..585]
gi\|59713126, gi\|... - gi\|59713126\|ref\|YP_205902.1\| dipeptide transport ATP-binding protein DppD [Vibrio fischeri ES114], g...	0.0	[175..705]	[10..562]
gi\|88864866, gi\|... - gi\|89055317\|ref\|YP_510768.1\| ABC transporter related [Jannaschia sp. CCS1], gi\|88864866\|gb\|ABD55743....	0.0	[170..703]	[1..551]
gi\|72609707, gi\|... - gi\|74017822\|ref\|ZP_00688445.1\| ABC transporter [Burkholderia ambifaria AMMD], gi\|72609707\|gb\|EAO4565...	0.0	[172..705]	[8..532]
gi\|91190129, gi\|... - gi\|91224883\|ref\|ZP_01260142.1\| peptide ABC transporter, ATP-binding protein [Vibrio alginolyticus 12... gi\|151938879, gi... - gi\|75856424\|ref\|ZP_00764052.1\| COG1123: ATPase components of various ABC-type transport systems, con...	0.0	[175..705]	[1..553]
gi\|84392017, gi\|... - gi\|84500083\|ref\|ZP_00998349.1\| probable ABC transporter, ATP-binding protein [Oceanicola batsensis H...	0.0	[174..704]	[1..554]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATCAEILRS EFPEIDGQVF DYVTGVLHSG SADFESVDDL VEAVGELLQE VSGDSKDDAG  60
   61 IRAVCQRMYN TLRLAEPQSQ GNSQVLLDAP IQLSKITENY DCGTKLPGLL KREQSSTVNA 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-636]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLEKAEARLK AKQEKRSEKD TLKTSNPLVL EEASASQAGS RKESRLESSG KNKSYDVRIE  60
   61 NFDVSFGDRV LLAGADVNLA WGRRYGLVGR NGLGKTTLLK MLATRSLRVP AHISLLHVEQ 120
  121 EVAGDDTPAL QSVLESDSVR EDLLRREREL TAQIAAGRAE GSEAAELAEI YAKLEEIEAD 180
  181 KAPARASVIL AGLGFTPKMQ QQPTREFSGG WRMRLALARA LFARPDLLLL DEPTNMLDVR 240
  241 AILWLENYLQ TWPSTILVVS HDRNFLNAIA TDIIHLHSQR LDGYRGDFET FIKSKQERLL 300
  301 NQQREYEAQQ QYRQHIQVFI DRFRYNANRA SQVQSKLKML EKLPELKPVD KESEVVMKFP 360
  361 DGFEKFSPPI LQLDEVDFYY DPKHVIFSRL SVSADLESRI CVVGENGAGK STMLKLLLGD 420
  421 LAPVRGIRHA HRNLKIGYFS QHHVEQLDLN VSAVELLARK FPGRPEEEYR HQLGRYGISG 480
  481 ELAMRPLASL SGGQKSRVAF AQMTMPCPNF YILDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	2ix8A
Description:	No description for 2ix8A was found.

Predicted Domain #3

Region A:
Residues: [637-709]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTNHLDMETI EALGRALNNF RGGVILVSHD ERFIRLVCRE LWVCEGGGVT RVEGGFDQYR  60
   61 ALLQEQFRRE GFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.045757
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits