YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18253011, gi|...
Organism: Arabidopsis thaliana
Length: 195 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18253011, gi|....

Description E-value Query
Range
Subject
Range
gi|7486656, gi|3... - pir||T04658 hypothetical protein F8D20.40 - Arabidopsis thaliana, gi|7270504|emb|CAB80269.1| putativ...
278.0 [0..1] [195..1]

Back

Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLSVSNKR YTYIHESGSK STREAIDIHH VIINGSSGTG YARRWGLGFF LVFLASSMYF  60
   61 LLGKDNPART LSWGCLLSGF LVMLHSRKFV KKESVIILPT FGIQLETQYL SGKTVSRFIP 120
  121 IDKILKPVLV ECVTPITCYW SLSLFLRGEE QLTLVFKELR PPLKMLVPIW KALCAAIGTD 180
  181 HQSETIAEEE HDVSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.762 d.233.1 Inhibitor of vertebrate lysozyme, Ivy
View Download 0.584 d.233.1 Inhibitor of vertebrate lysozyme, Ivy
View Download 0.534 d.129.3 Bet v1-like
View Download 0.439 d.198.2 Arp2/3 complex subunits
View Download 0.404 a.47.2 t-snare proteins


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle