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View Structure Prediction Details

Protein: GAT2_ARATH
Organism: Arabidopsis thaliana
Length: 452 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
245.0 [0..10] [408..958]

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Predicted Domain #1
Region A:
Residues: [1-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDPPRPDPF PVTRLDSDAG ALFVLQSKGE WWHAGFHLTT AIVGPTILTL PYAFRGLGWW  60
   61 LGFVCLTTMG LVTFYAYYLM SKVLDHCEKS GRRHIRFREL AADVLGSGLM FYVVIFIQTA 120
  121 INTGIGIGAI LLAGQCLDIM YSSLFPQGTL KLYEFIAMVT VVMMVLSQLP SFHSLRHINC 180
  181 ASLLLSLGYT FLVVGACINL GLSKNAPKRE YSLEHSDSGK VFSAFTSISI IAAIFGNGIL 240
  241 PEIQATLAPP ATGKMLKGLL LCYSVIFFTF YSAAISGYWV FGNNSSSNIL KNLMPDEGPT 300
  301 LAPIVVIGLA VIFVLLQLFA IGLVYSQVAY EIMEKKSADT TKGIFSKRNL VPRLILRTLY 360
  361 MAFCGFMAAM LPFFGDINAV VGAFGFIPLD FVLPMLLYNM TYKPTRRSFT YWINMTIMVV 420
  421 FTCAGLMGAF SSIRKLVLDA NKFKLFSSEV VD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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