YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ULP1C_ARATH
Organism: Arabidopsis thaliana
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ULP1C_ARATH.

Description E-value Query
Range
Subject
Range
gi|42571423 - gi|42571423|ref|NP_973802.1| OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type...
442.0 [0..1] [571..1]

Back

Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQRAIELD RVKKTMLNID WDDALGDEEV PELEIIATDK IPPREPTLSG YEPAVSVRSL  60
   61 RDNELDDHLK RQRSLLTRLG DKLADKGEKI RNRIGELEYE KQRRMFQQRT KMQDADNGCQ 120
  121 ILEKPKSSDV FMRASTASKD TSGQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [145-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTSGSKDVSR STFAAHFSDN LKMGPQPVKL VNDKLQDLGR GSWISKANRD SIIEKNNVWR  60
   61 SLPRLSKCKV SLKNFYSESK DPKGDRRPNE AYGKGKPNES SPYLLVDDDD GDDDKVIGYE 120
  121 TPRHWSLKAS PLQSSSCRKK SDDKVINLDE DEPLSPMVV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [304-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEACELPEGL PEDIYYPSSD QSDGRDLVQV SLKDLKCLSP GEYLTSPVIN FYIRYVQHHV  60
   61 FSADKTAANC HFFNTFFYKK LTEAVSYKGN DRDAYFVKFR RWWKGFDLFC KSYIFIPIHE 120
  121 DLHWSLVIIC IPDKEDESGL TIIHLDSLGL HPRNLIFNNV KRFLREEWNY LNQDAPLDLP 180
  181 ISAKVWRDLP NMINEAEVQV PQQKNDFDCG LFLLFFIRRF IEEAPQRLTL QDLKMIHKKW 240
  241 FKPEEASALR IKIWNILVDL FRKGNQTD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.154902
Match: 2iycA
Description: No description for 2iycA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle