YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20148231, gi\|...
Organism:	Arabidopsis thaliana
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20148231, gi|....

Description	E-value	Query Range	Subject Range
gi\|92895841 - gi\|92895841\|gb\|ABE92865.1\| Phospholipid/glycerol acyltransferase [Medicago truncatula]	289.0	[0..3]	[443..1]
gi\|7596761 - gi\|7596761\|gb\|AAF64532.1\| hypothetical protein [Arabidopsis thaliana]	284.0	[0..1]	[448..1]
gi\|57899656, gi\|... - gi\|57900119\|dbj\|BAD88181.1\| putative tafazzin isoform [Oryza sativa Japonica Group], gi\|57899656\|dbj...	248.0	[0..15]	[447..16]
PLSB_VIBVY - Glycerol-3-phosphate acyltransferase OS=Vibrio vulnificus (strain YJ016) GN=plsB PE=3 SV=1	237.0	[0..4]	[443..180]
PLSB_VIBVU - Glycerol-3-phosphate acyltransferase OS=Vibrio vulnificus GN=plsB PE=3 SV=1 PLSB_VIBVU - Glycerol-3-phosphate acyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=plsB PE=3 SV=1	236.0	[0..4]	[443..180]
gi\|84394327, gi\|... - gi\|84394327\|ref\|ZP_00993050.1\| glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B01], gi\|84...	227.0	[0..4]	[423..180]
PLSB_VIBPA - Glycerol-3-phosphate acyltransferase OS=Vibrio parahaemolyticus GN=plsB PE=3 SV=1 PLSB_VIBPA - Glycerol-3-phosphate acyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)... gi\|153839841, gi... - gi\|153839841\|ref\|ZP_01992508.1\| glycerol-3-phosphate acyltransferase [Vibrio parahaemolyticus AQ3810...	226.0	[0..4]	[443..180]
gi\|86148644, gi\|... - gi\|86148644\|ref\|ZP_01066925.1\| Glycerol-3-phosphate O-acyltransferase [Vibrio sp. MED222], gi\|858335...	224.0	[0..4]	[434..180]
gi\|254229778, gi... - gi\|75854145\|ref\|ZP_00761858.1\| COG2937: Glycerol-3-phosphate O-acyltransferase [Vibrio sp. Ex25], gi...	223.0	[0..4]	[434..180]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIHFVDKAD LWKSALLFNL KLRDRFRIAV DDHRGRATVF SPDGCFSSTI HRWVTRFRNF  60
   61 RRESLPSPPA FYRRRVSKDL TAEEESALFR MLQTVAVPLI GNACHVFMNG FNRVQVYGLE 120
  121 KLHDALLNRP KNKPLVTVSN HVASVDDPFV IASLLPPKFL LDARNLRWTL CATDRCFKNP 180
  181 VTSAFSRSVK VLPISRGEGI YQQGMDIAIS KLNNGGWVHI FPEGSRSRDG GKTMGSAKRG 240
  241 IGRLILDADT LPMVVPFVHT GMQDIMPVGA SVPRIGKTVT VIIGDPIHFN DILSTEGAQH 300
  301 VSRKHLYDAV SSRIGQRLYD LKAQVDRVYI EQQSMMS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [338-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNAKTPSDRA AEIFHRVDWD SFGMGAQFSE ESSPSSKPIG QSDDRIVRSP KRRVSPEGGV  60
   61 SLKIKKLMDS TEMMGFAARG LLMNEYKSRV ESANVGRPLK AWREYFMNRG L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits