YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36787954, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787954, gi|....

Description	E-value	Query Range	Subject Range
gi\|45440095, gi\|... - gi\|45440095\|ref\|NP_991634.1\| hypothetical protein YP_0235 [Yersinia pestis biovar Microtus str. 9100... gi\|21961024, gi\|... - gi\|22127888\|ref\|NP_671311.1\| hypothetical protein y4018 [Yersinia pestis KIM], gi\|21961024\|gb\|AAM875... gi\|16120575, gi\|... - gi\|218927443\|ref\|YP_002345318.1\| hypothetical protein YPO0237 [Yersinia pestis CO92], gi\|16120575\|re... gi\|51597960, gi\|... - gi\|51597960\|ref\|YP_072151.1\| hypothetical protein YPTB3670 [Yersinia pseudotuberculosis IP 32953], g... gi\|108813992, gi... - gi\|229904523\|ref\|ZP_04519634.1\| hypothetical protein YP516_4354 [Yersinia pestis Nepal516], gi\|22967... gi\|165990559, gi... - gi\|166010469\|ref\|ZP_02231367.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165927851, gi... - gi\|165927851\|ref\|ZP_02223683.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166963006, gi... - gi\|167419012\|ref\|ZP_02310765.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|77633038, gi\|... - gi\|77633038\|ref\|ZP_00795195.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|166205648, gi... - gi\|166213350\|ref\|ZP_02239385.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|117675300, gi... - gi\|77631210\|ref\|ZP_00793796.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|167468241 - gi\|167468241\|ref\|ZP_02332945.1\| hypothetical protein YpesF_10159 [Yersinia pestis FV-1] gi\|167425689, gi... - gi\|167425689\|ref\|ZP_02317442.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|186897156, gi... - gi\|186897156\|ref\|YP_001874268.1\| hypothetical protein YPTS_3862 [Yersinia pseudotuberculosis PB1/+],... gi\|169749106, gi... - gi\|170022572\|ref\|YP_001719077.1\| hypothetical protein YPK_0311 [Yersinia pseudotuberculosis YPIII], ... gi\|229836281, gi... - gi\|229836281\|ref\|ZP_04456448.1\| hypothetical protein YPS_0169 [Yersinia pestis Pestoides A], gi\|2297... gi\|229840095, gi... - gi\|229840095\|ref\|ZP_04460254.1\| hypothetical protein YPH_2426 [Yersinia pestis biovar Orientalis str... gi\|229690487, gi... - gi\|229842177\|ref\|ZP_04462332.1\| hypothetical protein YPF_0510 [Yersinia pestis biovar Orientalis str... Q664U9\|Q664U9_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|89104534, gi\|... - gi\|89104534\|ref\|ZP_01177074.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|149290123, gi... - gi\|150260715\|ref\|ZP_01917443.1\| hypothetical protein YPE_3031 [Yersinia pestis CA88-4125], gi\|149290... gi\|108781140, gi... - gi\|108809227\|ref\|YP_653143.1\| hypothetical protein YPA_3236 [Yersinia pestis Antiqua], gi\|108781140\|... gi\|145209174, gi... - gi\|145597478\|ref\|YP_001161553.1\| hypothetical protein YPDSF_0159 [Yersinia pestis Pestoides F], gi\|1... gi\|25509570 - pir\|\|AF0029 conserved hypothetical protein YPO0237 [imported] - Yersinia pestis (strain CO92)	103.0	[0..1]	[66..1]
gi\|238718853, gi... - gi\|77962767\|ref\|ZP_00826584.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia moll...	100.0	[0..1]	[66..1]
gi\|238783192, gi... - gi\|77957303\|ref\|ZP_00821362.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia berc...	99.0	[0..1]	[66..1]
gi\|238792964, gi... - gi\|77978255\|ref\|ZP_00833687.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia inte...	97.0	[0..1]	[66..1]
gi\|238788883, gi... - gi\|77974961\|ref\|ZP_00830498.1\| COG3036: Uncharacterized protein conserved in bacteria [Yersinia fred...	95.0	[0..1]	[66..1]
gi\|16421967, gi\|... - gi\|16766700\|ref\|NP_462315.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421967\|... lcl\|NC_016856.1_... - [gene=STM14_4114] [protein=putative cytoplasmic protein] [protein_id=YP_005239601.1] [location=compl...	93.0	[0..1]	[57..1]
gi\|81247065, gi\|... - gi\|82545654\|ref\|YP_409601.1\| hypothetical protein SBO_3285 [Shigella boydii Sb227], gi\|81247065\|gb\|A...	91.0	[0..1]	[57..1]
gi\|218367122, gi... - gi\|218560353\|ref\|YP_002393266.1\| hypothetical protein ECS88_3679 [Escherichia coli S88], gi\|21836712... gi\|110643530, gi... - gi\|110643530\|ref\|YP_671260.1\| hypothetical protein ECP_3379 [Escherichia coli 536], gi\|110345122\|gb\|... gi\|218429142, gi... - gi\|218691578\|ref\|YP_002399790.1\| hypothetical protein ECED1_3955 [Escherichia coli ED1a], gi\|2184291... gi\|227839567, gi... - gi\|227883423\|ref\|ZP_04001228.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783956... gi\|91212718, gi\|... - gi\|91212718\|ref\|YP_542704.1\| putative regulator [Escherichia coli UTI89], gi\|91074292\|gb\|ABE09173.1\|... gi\|237703021, gi... - gi\|237703021\|ref\|ZP_04533502.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26249876, gi\|... - gi\|26249876\|ref\|NP_755916.1\| putative regulator [Escherichia coli CFT073], gi\|26110304\|gb\|AAN82490.1...	91.0	[0..1]	[57..1]
gi\|169753401, gi... - gi\|170018473\|ref\|YP_001723427.1\| hypothetical protein EcolC_0422 [Escherichia coli ATCC 8739], gi\|16... gi\|38704158 - gi\|38704158\|ref\|NP_944562.1\| hypothetical protein ECs5530 [Escherichia coli O157:H7 str. Sakai] gi\|157162765, gi... - gi\|157162765\|ref\|YP_001460083.1\| hypothetical protein EcHS_A3485 [Escherichia coli HS], gi\|157068445... gi\|242378818, gi... - gi\|251786545\|ref\|YP_003000849.1\| hypothetical protein B21_03093 [Escherichia coli BL21], gi\|24237881... EG11968 - alternate ribosome-rescue factor A / Alternative stalled-ribosome rescue factor A; binds 50S ribosom... gi\|253322929, gi... - gi\|254289969\|ref\|YP_003055717.1\| hypothetical protein ECD_03142 [Escherichia coli BL21(DE3)], gi\|253... gi\|238902382, gi... - gi\|238902382\|ref\|YP_002928178.1\| hypothetical protein BWG_2982 [Escherichia coli BW2952], gi\|2388604... YHDL_ECOLI - Hypothetical protein yhdL - Escherichia coli gi\|254594628, gi... - gi\|254795228\|ref\|YP_003080065.1\| hypothetical protein ECSP_4262 [Escherichia coli O157:H7 str. TW143... gi\|226838958, gi... - gi\|254038452\|ref\|ZP_04872508.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683895... gi\|253975120, gi... - gi\|254163219\|ref\|YP_003046327.1\| hypothetical protein ECB_03142 [Escherichia coli B str. REL606], gi... gi\|38704158 - gi\|38704158\|ref\|NP_944562.1\| hypothetical protein ECs5530 [Escherichia coli O157:H7] gi\|124498108, gi... - gi\|124532218\|ref\|ZP_01702156.1\| protein of unknown function DUF331 [Escherichia coli B], gi\|12449810... EG11968 - alternate ribosome-rescue factor A / Alternative stalled-ribosome rescue factor A; binds 50S ribosom... gi\|218433996, gi... - gi\|218706899\|ref\|YP_002414418.1\| hypothetical protein ECUMN_3765 [Escherichia coli UMN026], gi\|21843... gi\|74313810, gi\|... - gi\|74313810\|ref\|YP_312229.1\| hypothetical protein SSON_3432 [Shigella sonnei Ss046], gi\|73857287\|gb\|... gi\|170082811, gi... - gi\|170082811\|ref\|YP_001732131.1\| hypothetical protein ECDH10B_3466 [Escherichia coli str. K-12 subst... gi\|188491128, gi... - gi\|188495929\|ref\|ZP_03003199.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18849112... gi\|89110719, gi\|... - gi\|89110719\|ref\|AP_004499.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|195939839 - gi\|195939839\|ref\|ZP_03085221.1\| hypothetical protein EscherichcoliO157_26146 [Escherichia coli O157:... gi\|218696984, gi... - gi\|218696984\|ref\|YP_002404651.1\| hypothetical protein EC55989_3708 [Escherichia coli 55989], gi\|2183...	90.0	[0..1]	[57..1]
gi\|50122924, gi\|... - gi\|50122924\|ref\|YP_052091.1\| hypothetical protein ECA4004 [Pectobacterium atrosepticum SCRI1043], gi...	90.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYHHKKGV IKDNALEALL RDPLFKQRVE KNKKGKGSYQ RKEKHSKASS WETSGKGSLD  60
   61 SLLLVF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits