YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36787851, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787851, gi|....

Description	E-value	Query Range	Subject Range
gi\|48861856, gi\|... - gi\|90022395\|ref\|YP_528222.1\| hypothetical protein Sde_2750 [Saccharophagus degradans 2-40], gi\|89951...	105.0	[0..1]	[106..1]
gi\|146397053, gi... - gi\|88935107\|ref\|ZP_01140744.1\| conserved hypothetical protein [Geobacter uraniumreducens Rf4], gi\|88...	103.0	[0..1]	[107..1]
gi\|84616913 - gi\|84616913\|emb\|CAJ13807.1\| plasmid stabilization system protein [Desulfococcus multivorans]	101.0	[0..1]	[106..1]
gi\|23129548, gi\|... - gi\|23129548\|ref\|ZP_00111374.1\| COG3668: Plasmid stabilization system protein [Nostoc punctiforme PCC...	100.0	[0..1]	[102..1]
gi\|134150290, gi... - gi\|254364776\|ref\|ZP_04980822.1\| conserved hypothetical protein [Mycobacterium tuberculosis str. Haar... gi\|148661766, gi... - gi\|167970524\|ref\|ZP_02552801.1\| hypothetical protein MtubH3_21823 [Mycobacterium tuberculosis H37Ra]... gi\|255096745 - gi\|255096745\|ref\|ZP_05326223.1\| hypothetical protein MtubK_11035 [Mycobacterium tuberculosis KZN 605... gi\|254815757 - gi\|254815757\|ref\|ZP_05220758.1\| hypothetical protein MtubKZN_08352 [Mycobacterium tuberculosis KZN 4... gi\|254550976 - gi\|254550976\|ref\|ZP_05141423.1\| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi\|253320498, gi... - gi\|253798995\|ref\|YP_003031996.1\| toxin [Mycobacterium tuberculosis KZN 1435], gi\|253320498\|gb\|ACT251... PARE1_MYCTU - Toxin ParE1 OS=Mycobacterium tuberculosis GN=parE1 PE=1 SV=2 PARE1_MYCTU - Toxin ParE1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=parE1 PE=1 SV=1 gi\|31793151, gi\|... - gi\|31793151\|ref\|NP_855644.1\| hypothetical protein Mb1994c [Mycobacterium bovis AF2122/97], gi\|316187... gi\|121493511, gi... - gi\|121637864\|ref\|YP_978087.1\| hypothetical protein BCG_1998c [Mycobacterium bovis BCG str. Pasteur 1... gi\|215404250 - gi\|215404250\|ref\|ZP_03416431.1\| hypothetical protein Mtub0_11315 [Mycobacterium tuberculosis 02_1987... gi\|215411638 - gi\|215411638\|ref\|ZP_03420434.1\| hypothetical protein Mtub9_09964 [Mycobacterium tuberculosis 94_M424... gi\|215427315 - gi\|215427315\|ref\|ZP_03425234.1\| hypothetical protein MtubT9_13379 [Mycobacterium tuberculosis T92] gi\|215430866 - gi\|215430866\|ref\|ZP_03428785.1\| hypothetical protein MtubE_09350 [Mycobacterium tuberculosis EAS054] gi\|218753668 - gi\|218753668\|ref\|ZP_03532464.1\| hypothetical protein MtubG1_09599 [Mycobacterium tuberculosis GM 150... PARE1_MYCTO - Toxin ParE1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=parE1 PE=3 SV=1 gi\|119701791, gi... - gi\|76784164\|ref\|ZP_00771350.1\| COG3668: Plasmid stabilization system protein [Mycobacterium tubercul... gi\|219557911 - gi\|219557911\|ref\|ZP_03536987.1\| hypothetical protein MtubT1_11642 [Mycobacterium tuberculosis T17] gi\|81254153, gi\|... - gi\|81254153\|ref\|ZP_00878680.1\| COG3668: Plasmid stabilization system protein [Mycobacterium tubercul... gi\|224990348, gi... - gi\|224990348\|ref\|YP_002645035.1\| hypothetical protein JTY_1982 [Mycobacterium bovis BCG str. Tokyo 1...	100.0	[0..1]	[101..1]
gi\|30248711, gi\|... - gi\|30248711\|ref\|NP_840781.1\| hypothetical protein NE0702 [Nitrosomonas europaea ATCC 19718], gi\|3018...	99.0	[0..3]	[106..6]
gi\|82703899, gi\|... - gi\|82703899\|ref\|YP_413464.1\| plasmid stabilization system protein [Nitrosospira multiformis ATCC 251...	98.0	[0..4]	[106..3]
gi\|56476715, gi\|... - gi\|56476715\|ref\|YP_158304.1\| plasmid stabilization system protein protein [Aromatoleum aromaticum Eb...	97.0	[0..6]	[106..2]
gi\|110598002, gi... - gi\|110598002\|ref\|ZP_01386283.1\| Plasmid stabilization system [Chlorobium ferrooxidans DSM 13031], gi...	97.0	[0..1]	[107..1]
gi\|109649124, gi... - gi\|68205428\|ref\|ZP_00557631.1\| Plasmid stabilization system [Desulfitobacterium hafniense DCB-2], gi...	96.0	[0..3]	[106..10]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYHVMLTKN AEADLEDIYD YIVENDSSEK ADYVLDQLLK TADSLANFPE KGNYPKELQA  60
   61 LGIRDFRQTF FKPYRVIYQI TGKQVVIFVI ADGRRDMQTL LTHRLLSVSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.09
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits