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View Structure Prediction Details

Protein: HFQ_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HFQ_PHOLL.

Description E-value Query
Range		 Subject
Range
HFQ_SALG2 - RNA-binding protein Hfq OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=hfq PE=3 SV=1
HFQ_SALCH - Protein hfq OS=Salmonella choleraesuis GN=hfq PE=3 SV=1
HFQ_SALCH - Protein hfq OS=Salmonella choleraesuis GN=hfq PE=3 SV=1
HFQ_SALCH - RNA-binding protein Hfq OS=Salmonella choleraesuis (strain SC-B67) GN=hfq PE=3 SV=1
 158.0 [0..1] [102..1]

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Predicted Domain #1
Region A:
Residues: [1-102] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQIESFD QFVILLKNTV SQMVYKHAIS  60
   61 TVVPSRPVSH HSSNTSVGAS VGNYHSGGVS APAAQQESDG TE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1u1sA
Description: Hfq protein from Pseudomonas aeruginosa. Low-salt crystals
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3.35169246976368 bayes_pls_golite062009
RNA binding 2.84369313702118 bayes_pls_golite062009
binding 1.87128744333088 bayes_pls_golite062009
nucleic acid binding 1.77149720854225 bayes_pls_golite062009
catalytic activity 0.312834499620126 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle