YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|36787325, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787325, gi|....

Description E-value Query
Range
Subject
Range
gi|47214278 - gi|47214278|emb|CAG01335.1| unnamed protein product [Tetraodon nigroviridis]
163.0 [0..1] [183..1446]

Back

Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLVYLDTC YGPVDKDVIE KARKIRLLIC DVDGVMSDGR IYMGNNGEEL KTFNVRDGYG  60
   61 IRCLITSGIE VAIITGRKAK LLEDRANTLG ITHLYQGQSD KVLAYQKLLD TLGLRPEQVA 120
  121 YIGDDLIDWP VMEQVGLSVA VADAHPLLLP KAHYVTQIAG GHGAVRELCD LVLFAQNKLE 180
  181 EAKGLSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1j8dA
Description: Probable phosphatase YrbI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.55296860681783 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle