YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37527881, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37527881, gi|....

Description	E-value	Query Range	Subject Range
gi\|51597806, gi\|... - gi\|51597806\|ref\|YP_071997.1\| putative BolA/YrbA family protein [Yersinia pseudotuberculosis IP 32953... Q665K3\|Q665K3_YERPS - Putative BolA/YrbA family protein - Yersinia pseudotuberculosis gi\|117672257 - gi\|117672257\|ref\|ZP_01495315.1\| hypothetical protein YpseI_02000418 [Yersinia pseudotuberculosis IP ... gi\|186896998, gi... - gi\|186896998\|ref\|YP_001874110.1\| BolA family protein [Yersinia pseudotuberculosis PB1/+], gi\|1867000... gi\|169749302, gi... - gi\|170022768\|ref\|YP_001719273.1\| BolA family protein [Yersinia pseudotuberculosis YPIII], gi\|1697493...	122.0	[0..1]	[84..4]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTNEIKQVL MDKLALDEVI VNGDGSHFQV IVVGEMFAGM SRVKQQQAVY APLMEYIADN  60
   61 RIHALSIKAY TPDDWKRDRK LNGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1ny8A
Description:	Solution structure of Protein yrbA from Escherichia Coli: Northeast Structural Genomics Consortium target ER115
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits