YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36787146, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787146, gi|....

Description	E-value	Query Range	Subject Range
gi\|197284045, gi... - gi\|197284045\|ref\|YP_002149917.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Pro... gi\|227358084, gi... - gi\|227358084\|ref\|ZP_03842426.1\| acrAB operon repressor (tetR-family transcriptional regulator) [Prot... gi\|17973458 - gi\|17973458\|gb\|AAL32124.1\| regulatory protein AcrR [Proteus mirabilis]	139.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKTKQQAE ETRQQIIDAA IKEFSERGVS ATSLTDIATT AGVTRGAIYW HFKNKVDLFS  60
   61 EACRITDSKI DELEKEYQAK YPNNPLLILR TLIIHILTSV VDDPKNRLLM EIFFHKCEFV 120
  121 GEMSALVEVR QELCVADYVR IEESLSGCIA SGQLPYNLHL RRAAIMLRGL ITGLLENWLF 180
  181 APDSFDIQKE AESLVDSFID MLKYSEHMKI AEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2uxhA
Description:	No description for 2uxhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits