YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36786013, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36786013, gi|....

Description	E-value	Query Range	Subject Range
gi\|26248106, gi\|... - gi\|26248106\|ref\|NP_754146.1\| DNA polymerase III, theta subunit [Escherichia coli CFT073], gi\|2610850... gi\|24052188, gi\|... - ref\|NP_707705.1\| DNA polymerase III theta subunit [Shigella flexneri 2a str. 301], gb\|AAN43412.1\| D... gi\|237705794, gi... - gi\|237705794\|ref\|ZP_04536275.1\| DNA polymerase III theta subunit [Escherichia sp. 3_2_53FAA], gi\|226... gi\|110343552, gi... - gi\|110641960\|ref\|YP_669690.1\| DNA polymerase III subunit theta [Escherichia coli 536], gi\|110343552\|... gi\|91211065, gi\|... - gi\|91211065\|ref\|YP_541051.1\| DNA polymerase III theta subunit [Escherichia coli UTI89], gi\|91072639\|...	129.0	[0..1]	[74..30]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHNLAELST ENMDKVNVDL AASGVAFKER YNMPVLPDTV EQEQPEHLRQ YFQQRLVHYR  60
   61 QLSKQLSNLP YEPKGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1du2A
Description:	Theta subunit of DNA polymerase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits